Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1644 87.8 4e-15 seq1515 84.2 5e-14 seq1216 77.0 7e-12 >seq1644 Length=4506 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCT-TCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||||||||||| | || || || |||||||||| || ||| ||| || Sbjct 699 AAAAGAAGTTTACAACTATAATAAGCTGTCTTCCTTCACGCGACGATGCTCTGTCAAGCT 758 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 || ||||| || ||||| |||||| ||||||||||||||||||| | || | ||| Sbjct 759 TGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGGGCTGTATTTCA 818 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAG 227 | ||||||||| || | |||||||| Sbjct 819 ATCCCAATGTGGCTGATCCCCCTCTCAG 846 >seq1515 Length=47061 Score = 84.2 bits (92), Expect = 5e-14 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCT-TCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||||||||||| | || || || ||||||| || || ||| ||| || Sbjct 12869 AAAAGAAGTTTACAACTATAATAAGCTGTCTTCCTTCAAGCGACGATGCTCTGTCAAGCT 12810 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 || ||||| || ||||| |||||| ||||||||||||||||||| | || | ||| Sbjct 12809 TGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGGGCTGTATTTCA 12750 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAG 227 | ||||||||| || | |||||||| Sbjct 12749 ATCCCAATGTGGCTGATCCCCCTCTCAG 12722 >seq1216 Length=6849 Score = 77.0 bits (84), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCT-TCATCCTTCACGCTAC--TTGGCTGGTTCAGA 137 ||||||||||||||| | || || || |||||||||| || || ||| ||| Sbjct 3051 AAAAGAAGTTTACAACTATAATAAGCTGTCTTCCTTCACGCGACGATTCTCTG--TCAAG 3108 Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || || ||||| || |||| |||||| ||||||||||||||||||| | || | | Sbjct 3109 CTTGCGCTCATTGCAGAAGATTCTCCACTGCAGCCTCCCGTAGGAGTTTGGGCTGTATTT 3168 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTCAG 227 || | |||| |||| || | |||||||| Sbjct 3169 CAATCCCAAGGTGGCTGATCCCCCTCTCAG 3198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068761907968