Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7931 196 2e-47 seq5170 192 2e-46 seq678 181 4e-43 seq7686 163 1e-37 seq8632 149 3e-33 seq3811 145 3e-32 seq6301 93.3 2e-16 >seq7931 Length=43919 Score = 196 bits (216), Expect = 2e-47 Identities = 225/303 (74%), Gaps = 15/303 (5%) Strand=Plus/Plus Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||| |||| || || ||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 2325 TAAAGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGT 2384 Query 452 GTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT 511 | ||| | ||| || || || |||||||||| |||| |||| | | | Sbjct 2385 ATGCGGGCGGCAACCCTGTATGCACAATGAAAGTG---GGAGTAGGGAGAGTTTTACTTT 2441 Query 512 -----------GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 ||||| ||||||| | || ||| | || ||||||| |||| Sbjct 2442 TTGCTTTTCTTGCACCTACGACCGACCACGAACTCTGTGAGAGG-TTTGAGTTGTAGCAC 2500 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | ||||| |||||||||| |||||||||||||||||| |||||||||| ||| |||| Sbjct 2501 ATCTGTTAGGACCCGAAATATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGC 2560 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||| |||||||||| |||| | ||| || |||||||| |||||||| ||||||||||||| Sbjct 2561 CTGATGGAGGCTCGTAGCGATACTGACGCGCAAATCGTTCGTCAAACTTGGGTATAGGGG 2620 Query 681 CGA 683 ||| Sbjct 2621 CGA 2623 >seq5170 Length=5624 Score = 192 bits (212), Expect = 2e-46 Identities = 225/301 (75%), Gaps = 11/301 (4%) Strand=Plus/Plus Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 |||| ||| || || | ||||||| |||||||||||||||||||||||| | ||| ||| Sbjct 5006 TAATTGTTTCAACCGACTCGTCTTGAAACACGGACCAAGGAGTCTAACATATGTGCCAGT 5065 Query 452 GTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC---CGTGAG 508 | ||||| ||| || || || ||||||||||| | ||| | || | | Sbjct 5066 ATGCGGGTGGCAACCCTGTATGCACAATGAAAGTGAGAGTAGG-GAGAGTTTTGCTTTTT 5124 Query 509 GGT------GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | ||||| ||||||| | || ||| | || ||||||| |||| | Sbjct 5125 GCTTTTCTCGCACCTACGACCGACCACGAACTCTGTGAGAGG-TTTGAGTTGTAGCACAT 5183 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||||| ||||||||||||||||||| || |||||||||| ||| |||| || Sbjct 5184 CTGTTAGGACCCAAAAGATGGTGAACTATGCCGGAGTAGGGTGAAGTCAGGCGAAAGCCT 5243 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 | |||||||||| |||| | ||| ||||||||||| |||||||| ||||||||||||||| Sbjct 5244 GATGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCG 5303 Query 683 A 683 | Sbjct 5304 A 5304 Score = 138 bits (152), Expect = 5e-30 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 4571 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 4630 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||| ||| ||||||| |||| |||||||||||| |||||||| Sbjct 4631 ACTGGCGTGAGACCGATCGCGAACAAGTACTGTGAAGGAAAGATGAAAAAGACTTTGGAC 4690 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 || ||||| ||||| |||||||| ||||||||||||| ||| ||| Sbjct 4691 AGGGAGTT-AAAAGTGTCTGAAATTGCTGAAAGGGAAGCGATTGAAAC 4737 >seq678 Length=13461 Score = 181 bits (200), Expect = 4e-43 Identities = 220/297 (74%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 396 GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT 455 |||| || || ||||||||| |||||||| ||||||||||||||| | ||||||| | Sbjct 4961 GGTTTCAACCGACCCGTCTTGAAACACGGATCAAGGAGTCTAACATATGTGCGAGTATGC 5020 Query 456 GGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA------ACCCGTGAGG 509 ||| | ||| || || || ||||||||||| | ||| | || | || Sbjct 5021 GGGCGGCAACCCTGTATGCACAATGAAAGTGAGGGTAGG-GAGAGGTTTTATTTTTGCAT 5079 Query 510 GT---GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 | ||||| ||||||| | || ||| | || ||||| | |||| | |||| Sbjct 5080 TTCTCGCACCTACGACCGACCACGAACTCTGTGAGAGG-TTTGAATTGTAGCACATCTGT 5138 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 | |||||| ||||||| |||||||||||||| || ||||||| ||| |||| ||| || Sbjct 5139 TAGGACCCAAAAGATGCTGAACTATGCCTGAGTAAGGTGAAGTCAGGCGAAAGCCTGATG 5198 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 5199 GAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 5255 Score = 77.0 bits (84), Expect = 1e-11 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 141 GATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 2738 GATGAAAAGGACTTTGGAAAGAGAGTT-AAAAGTGTCTGAAATTGCTGAAAGGGAAGCGA 2796 Query 201 TTGCAAC 207 ||| ||| Sbjct 2797 TTGAAAC 2803 >seq7686 Length=2938 Score = 163 bits (180), Expect = 1e-37 Identities = 119/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 340 TTTGAGTTGTAGCACATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTG 399 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||| ||| |||| ||| |||||||||| |||| | ||| ||||||||||| ||||||| Sbjct 400 AAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAA 459 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 460 ACTTGGGTATAGGGGCGA 477 >seq8632 Length=2308 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||| |||| | ||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 37 TTTGAGTTGTAGCACATCTGTTAGGACCCGAAAGGTGGTGAACTATGCCTGAGTAGGGTG 96 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||| ||| ||| ||| |||||||||| |||| | ||| ||||||||||| ||||||| Sbjct 97 AAGTCAGGCGAAGGCCTGATGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAA 156 Query 666 ATTTGGGTATAGGGG 680 | ||||||||||||| Sbjct 157 ACTTGGGTATAGGGG 171 >seq3811 Length=25272 Score = 145 bits (160), Expect = 3e-32 Identities = 109/128 (85%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 1148 AGCATATCTGTTAGGACCCGAAAGATGATGAACTATGCCTGAGTAGGGTGAAGCCAGGCG 1207 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 || ||| |||||||| |||||| | ||| ||||||||||| || |||| ||| |||| Sbjct 1208 GAAGCCTGATGGAGGCTGGCAGCGATACTGACGTGCAAATCGTTCACCAAACTTGCGTAT 1267 Query 676 AGGGGCGA 683 |||||||| Sbjct 1268 AGGGGCGA 1275 Score = 118 bits (130), Expect = 4e-24 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | ||||| ||||||||||||| |||||||||||||| ||| ||||| ||| | Sbjct 5150 AGCACATCTGTTAGGACCCGAAAGATCATGAACTATGCCTGAGTAGAATGAAGTCAGGCG 5209 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||| ||| |||||||| ||||| | ||| ||||||||||| ||| |||| | | ||| Sbjct 5210 AAAGCCTGATGGAGGCTGACAGCGATACTGACGTGCAAATCGTTCGCCAAACTCGCATAT 5269 Query 676 AGGGGCGA 683 |||||||| Sbjct 5270 AGGGGCGA 5277 >seq6301 Length=4164 Score = 93.3 bits (102), Expect = 2e-16 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||| | || ||||||||||||||||| |||| ||||| ||| ||| || Sbjct 1835 CTGTTAGGACGCCAACTGTGGTGAACTATGCCTGAGTAGGATGAAGTCAGGCAAAAGCCT 1776 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 | | ||||||| |||||| | | ||||| |||| ||||||| |||| || ||||||| Sbjct 1775 GATAAAGGCTCGTAGCGGTACAGAGGTGCATATCGTCCGTCAAACTTGGATACAGGGGCG 1716 Query 683 A 683 | Sbjct 1715 A 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079778292800