Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8452 150 5e-34 seq5499 82.4 2e-13 seq1485 82.4 2e-13 >seq8452 Length=2322 Score = 150 bits (166), Expect = 5e-34 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||||| ||||| ||||||| || ||| ||||||| | ||||||| Sbjct 876 ATCTTCACAGACATTTCTATTTCACCGAATCTTTCTCTAAGACAGCATCCAAGTCGTTAC 935 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 936 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 995 Query 135 GTTACGGCCGCCGTTTACCGGGGCTT 160 ||||| |||||||||||| || |||| Sbjct 996 GTTACAGCCGCCGTTTACTGGAGCTT 1021 >seq5499 Length=5165 Score = 82.4 bits (90), Expect = 2e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||| || |||||| |||||| ||||| |||||||||||||||||| |||||||| |||| Sbjct 3902 TCGTCACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTGGAC 3961 Query 128 CGT 130 ||| Sbjct 3962 CGT 3964 >seq1485 Length=815 Score = 82.4 bits (90), Expect = 2e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| |||||| |||||| ||||| |||||||||||||||||| |||||||| |||| Sbjct 334 TCGTTAAACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTGGAC 275 Query 128 CGT 130 ||| Sbjct 274 CGT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260669683712