Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9841 340 3e-91 seq3655 129 1e-27 seq9507 109 9e-22 seq8452 78.8 2e-12 >seq9841 Length=1570 Score = 340 bits (376), Expect = 3e-91 Identities = 232/261 (89%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 89 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTTCCTATT 148 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || |||||||||||||||||| Sbjct 149 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAGTGATAGGAAGAGCCGACA 208 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 268 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 269 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGACCTAAAGGATCGATAGGCC 328 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 329 ATGCTTTCACAGTTTGTATTC 349 >seq3655 Length=25879 Score = 129 bits (142), Expect = 1e-27 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| Sbjct 10049 ATGATAGGAAGAGCCGCAATCGAAGGATAAAAAAGCAACGCTGCTATGAACGCTTGGCTG 9990 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||||| ||||||| ||||||||||||||| Sbjct 9989 CCACATGCCAGTTTTCCCTGTGGTAACTT 9961 >seq9507 Length=14311 Score = 109 bits (120), Expect = 9e-22 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||| ||| ||||||||||||||| || |||||| ||||||||||| |||| ||| | Sbjct 6345 CAGTATAGTACAACTAACCTGTCTCACGAAGGTCTAGTCCCAGCTCACGCTCCCCATTGG 6286 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 || |||||| |||||| ||| || |||||| || |||||||| ||||||||||| Sbjct 6285 CGGATGAACAGTCCAACACTTTGAGACTTCTGCCTCTCAGTGATAGGATGAGCCGACATC 6226 >seq8452 Length=2322 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 322 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 381 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 382 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 438 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 439 CCCGTCAATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854311689216