Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq8452 102 9e-20 seq5499 82.4 8e-14 seq1485 80.6 3e-13 >seq8452 Length=2322 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 933 TACACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTT 992 Query 173 A 173 | Sbjct 993 A 993 >seq5499 Length=5165 Score = 82.4 bits (90), Expect = 8e-14 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||| |||||| ||||| |||||||||||||||||| |||||||| ||||||| Sbjct 3907 ACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTGGACCGT 3964 >seq1485 Length=815 Score = 80.6 bits (88), Expect = 3e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 || ||||||| |||||| ||||| |||||||||||||||||| |||||||| ||||||| Sbjct 330 TAAACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTGGACCGT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547145208864