Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5880 273 7e-71 seq6434 253 7e-65 seq3647 253 7e-65 seq9841 232 2e-58 seq7686 120 1e-24 seq7673 113 1e-22 seq10215 96.9 1e-17 seq3564 87.8 6e-15 >seq5880 Length=4592 Score = 273 bits (302), Expect = 7e-71 Identities = 174/189 (92%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 316 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCCTTAGTCCATTCAT 257 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 || ||||||||||||||||| ||||||||||||||||||||| ||||||||||| || Sbjct 256 GCACGTCACTAATTAGATGAAAAGGCATTTGGCTACCTTAAGAACGTCATAGTTACGTCC 197 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 |||||| ||||||||||| ||||||||| |||| || |||||||||||||||||||||| Sbjct 196 GCCGTTAACCCGCGCTTGATTGAATTTCATCACATTCGCATTCAGAGCACTGGGCAGAAA 137 Query 518 TCACATTGC 526 ||||||||| Sbjct 136 TCACATTGC 128 >seq6434 Length=18245 Score = 253 bits (280), Expect = 7e-65 Identities = 307/411 (75%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 27 TCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCC 86 ||||||||| |||| | |||| |||||||||| | | |||| | ||||||||||| Sbjct 5375 TCTGTTCTCATTGAGCCTGCCTTTCGACACCTGCGCTGTTGTTTCCTATATGTGCCGCCC 5316 Query 87 CAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGC-CCGCGAAG---GACCT 142 ||||||| ||| ||||||| | | || || | |||| || || ||| | ||| Sbjct 5315 CAGCCAAGCTCTCCACCTGTCCGTCTCTTCCGCATTGATCAGCTCCAAAAAGTGCGCCCT 5256 Query 143 TAACGCCAGAAA---ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaa 199 | | || ||| ||| | | | | | || ||| || | ||||||||| | Sbjct 5255 GA--GGCAAAAACACATGCTGCGC-ATGTC----TCAACTTGATGAAATAAGTAAAACGA 5203 Query 200 CGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTC 259 | | | | |||||||| ||||| ||||||| |||||||| ||| |||||| | Sbjct 5202 CACTGATGATAGTGGTACTTCACGATCGCCGAA---GCTCCCACCTATGGTACACCCCCT 5146 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 ||||| || ||||||| |||| ||||||||| |||| |||||| | |||||||||||| | Sbjct 5145 AAGTCGTTCCACAAAGCCGGATTAGAGTCAA-CTCAGCAGGGTTTCCTTTCCCCGCTGGT 5087 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 ||||||||| |||||||||| ||||||| |||| ||||||||||||||||| ||||| | Sbjct 5086 TCCGCCAAGACCGTTCCCTTAGCTGTGGGTTCGTTAGATAGTAGATAGGGAGAGTGGTGA 5027 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 | | |||||| ||||||||| |||||| ||||||||||||| || | |||| Sbjct 5026 TATTGTTAATTCATTCATGCACGTCACAAATTAGATGACGACGCTTCTGGC 4976 >seq3647 Length=8413 Score = 253 bits (280), Expect = 7e-65 Identities = 172/193 (89%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8094 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 8153 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA----GTCATAGTTAC 453 || ||||||||||||||||| |||||||||||||||||| | | |||||||||| Sbjct 8154 GCACGTCACTAATTAGATGAAAAGGCATTTGGCTACCTTAGGCTACTACGTCATAGTTAG 8213 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||| ||||| ||| | ||||||||| |||| || |||||||||||||||||| Sbjct 8214 GTCCGCCGTTAACCCGTGCTCGATTGAATTTCATCACATTCGCATTCAGAGCACTGGGCA 8273 Query 514 GAAATCACATTGC 526 ||||||||||||| Sbjct 8274 GAAATCACATTGC 8286 >seq9841 Length=1570 Score = 232 bits (256), Expect = 2e-58 Identities = 246/316 (78%), Gaps = 15/316 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 383 CTTTTGGTCAGCATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGCTATT 442 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| |||| || | |||| Sbjct 443 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTGTGTCTTCCGCATTGATC 502 Query 127 GGCCCGC-GAAGG--ACCTTAACGCCAGAAA---ATGGTCGGTGAAGACCAGT-TCCGCT 179 || | | ||||| ||||||| | || ||| ||| | | | | | || || | Sbjct 503 AGCACCCAGAAGGGCACCTTAA-GACAAAAACACATG--CCGCGCATGC--GTCTCAACC 557 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 | | || ||||||||| || | || ||||||||||||||| |||| | |||| Sbjct 558 TGACGGAATAAGTAAAACGACACTGAGAGTAGTGGTATTTCACGATTGCCGGA---GCTC 614 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| |||||||||| | |||||| || ||||||||||||||||||||||||||||||| Sbjct 615 CCACCAATTCTACACCCCCCAAGTCGTTCCACAAAGTCGGACTAGAGTCAAGCTCAACAG 674 Query 300 GGTCTTCTTTCCCCGC 315 |||||||||||||||| Sbjct 675 GGTCTTCTTTCCCCGC 690 >seq7686 Length=2938 Score = 120 bits (132), Expect = 1e-24 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||| || ||||| || |||||||| ||||||||| |||| ||||||||| | Sbjct 2107 GTCATAGTTACGTCCACCGTTAACTCGCGCTTGATTGAATTTCATCACATTGACATTCGG 2048 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| || Sbjct 2047 AGCACTGGGCAGAAATCACATTGCGTCAGCA 2017 >seq7673 Length=3040 Score = 113 bits (124), Expect = 1e-22 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3040 TGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTAC 2981 Query 434 CTTAA 438 ||||| Sbjct 2980 CTTAA 2976 >seq10215 Length=1400 Score = 96.9 bits (106), Expect = 1e-17 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||| Sbjct 1333 GTCATAGTTACGTCCGCCGTTAACCCGCGCTTGATTGAATTTCATCACATTGACATTCAG 1392 Query 503 AGCACTGG 510 |||||||| Sbjct 1393 AGCACTGG 1400 >seq3564 Length=8539 Score = 87.8 bits (96), Expect = 6e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||| | ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 3045 GCTAGATTGAATTTCATCACATTGACATTCAGAGCACTTGGCAGAAATCACATTGCGTCA 3104 Query 531 ACA 533 || Sbjct 3105 GCA 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635030985728