Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq998 251 1e-64 seq479 197 2e-48 seq3479 109 8e-22 >seq998 Length=8601 Score = 251 bits (278), Expect = 1e-64 Identities = 198/232 (85%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||| ||| || || ||| |||| | ||||| |||| ||||||| ||| | Sbjct 2760 GTACAAGAGGCAGCGACTTAATCGGCGCAAGCT-GCTGACTTGCGCCTACTAGGCATT-C 2817 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||| ||||||| || ||||||||| | ||||||||||||||||| | ||||| |||| Sbjct 2818 CTCCTTGAAGATTAATAATTGCAATAACCTATCCCCATCACGATGCACACTCAAAAGATT 2877 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||||||||||||||| | | || ||||| || |||||||||||||||||||| Sbjct 2878 ACCCAGACCTGTCGGCCAAGGTAAAA-ACACGTTGCATGCATCAGTGTAGCGCGCGTGCA 2936 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2937 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 2988 >seq479 Length=267577 Score = 197 bits (218), Expect = 2e-48 Identities = 152/178 (85%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 52 AGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111 ||| || |||||||||||| || ||||||||| |||||||||||||| ||| | | Sbjct 240647 AGGGATGTCCTCGTTGAAGCTTAATAATTGCAATAGTCTATCCCCATCACAATGCACGCT 240706 Query 112 CAAA-GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 |||| || ||||| ||||||||||||||||| | ||||||| || ||||||||| | Sbjct 240707 CAAAAGACTACCCAGACCTGTCGGCCAAGGTTGGA-ACTCGTTCCATGCATCAGTGTTGG 240765 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240766 GCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 240823 >seq3479 Length=20278 Score = 109 bits (120), Expect = 8e-22 Identities = 115/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 79 TTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAA 138 ||||||| || ||| | |||||| ||| | |||| || ||| |||||| ||| ||| Sbjct 12197 TTGCAATAATGTATTCTCATCACAATGCACACTCAAT-ATCACCTAGACCTGCCGGTCAA 12139 Query 139 GGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC 198 ||||| | |||| ||| || ||||||| ||||||| | || | |||| | | |||||| Sbjct 12138 GGTGAAA-ACTCATTGCATGCATCAGTATAGCGCGAGCGCAGAACAGAGCCTATAAGGGT 12080 Query 199 ATCACAGACCTGTTATTGCCTCAAACTTC 227 ||||||||||||||||| ||||||| || Sbjct 12079 CTCACAGACCTGTTATTGGCTCAAACGTC 12051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751972994505