Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3553 196 9e-48 seq3276 167 4e-39 seq1435 89.7 9e-16 seq836 77.0 6e-12 >seq3553 Length=117791 Score = 196 bits (216), Expect = 9e-48 Identities = 194/246 (79%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTC-GAATACATTA 126 ||| ||||||| ||| |||| || |||||| |||||||| | |||| | |||||| | Sbjct 109542 GGAATTTTACTCTGAGAAAAATATAGTGTTGCAAGCAGGCTTGTTGCCCTGAATACTGCA 109483 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 ||||||||||| |||||||| | || ||||||||||||||||||||||| ||| Sbjct 109482 ACATGGAATAATGAGGTAGGACGT-CAGTCCTATTTTGTTGGTTTCTAGGACCATGATAA 109424 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||| ||| |||||||| ||||| | ||||| || | ||||||||| ||||||| ||| Sbjct 109423 TGACTAAGGGGGATAGTTGGGGGGATTCGTATTTAACTTTCAGAGGTGGAATTCTTAGAT 109364 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| | ||||||||||||| ||| ||||||||| || ||||||| | |||| Sbjct 109363 TTGTTAAAGAGGAGCTACTGCGAAAGCATTCGCCAAGGATGCTTCCATTAATGA-AGAAC 109305 Query 307 GAAAGT 312 || ||| Sbjct 109304 GACAGT 109299 >seq3276 Length=28627 Score = 167 bits (184), Expect = 4e-39 Identities = 192/251 (76%), Gaps = 13/251 (5%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAG 127 || ||| |||||| | | |||| ||| |||||||| | | ||| |||||| || Sbjct 19626 ACCTTTTCTTTGAGACGAATAGAACGTTTCAAGCAGGCATGT-CTCACTGAATACTGAAG 19568 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 |||||||||||| ||| ||||| ||| |||||| ||||| | ||||| ||| | Sbjct 19567 CATGGAATAATAAGATAAGACGT-CGGCTCTATTCTGTTGTT-----GGACCAAGGTAGT 19514 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||| |||||| |||||||| | ||||| || || |||| || |||||||| |||| Sbjct 19513 GATTATTAGGGACAGTCGGGGACATTCGTATTTAACTGCCAGAAGT-AAATTCTTAGATT 19455 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | | ||||| ||||||||||||||| || |||||||||||||||||||||| ||||| Sbjct 19454 TTTCAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACG 19396 Query 308 AAAGTTAGGGG 318 | || |||||| Sbjct 19395 ACAG-TAGGGG 19386 >seq1435 Length=59873 Score = 89.7 bits (98), Expect = 9e-16 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 226 TCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA 285 ||||||||||| ||||| ||||| || ||||| |||||| |||||||| || |||| || Sbjct 7337 TCAGAGGTGAATTTCTTAGATTTGTTAAAGACGAACTACAGCGAAAGCATTTGCCAACGA 7278 Query 286 TGTTTTCATTAATCAGTGAACGAAAG 311 ||||||||||| ||| |||||| || Sbjct 7277 TGTTTTCATTAGTCA-AGAACGACAG 7253 >seq836 Length=92666 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/93 (80%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 110 TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT 169 ||| || ||||| ||||||||| || || ||| || | |||||||||||||||||| Sbjct 86963 TTTTCTGTAATACTGCAGCATGGAAGAAAAGGATA--ACTT-CGGTTCTATTTTGTTGGT 87019 Query 170 TTCTAGGACCGCCGTAATGATTAATAGGGATAG 202 |||| ||||| |||| |||||||||||| || Sbjct 87020 TTCTGGGACCAAGGTAACGATTAATAGGGACAG 87052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915166073536