Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06]
3,707 sequences; 55,007,932 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq222 190 6e-46
seq1998 123 7e-26
>seq222
Length=5187
Score = 190 bits (210), Expect = 6e-46
Identities = 184/232 (79%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 295 TACGCTCGCAAGAGTGAAACTTAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 236
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| | ||||||||||||||||||| | ||||| || | | | |
Sbjct 235 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAATAATAT-AGGTTTT 177
Query 121 TAGAGAT---AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177
|| | || | | ||| || || | ||||||| ||||||| ||||||
Sbjct 176 TAAAAATTTAATAAATTT-TTATTAATATAAC-CATATACAGGTGGTGCATGGCTGTCGT 119
Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229
||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 118 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGTATCCCTTA 67
>seq1998
Length=46995
Score = 123 bits (136), Expect = 7e-26
Identities = 161/219 (74%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
||||||| ||||||| || ||||||| | | | |||||||||| |||||||||||||
Sbjct 25075 CGCAAGGGTGAAACTTAAGGGAATTGGAAGAGGCTCGCACAAGCGATGGAGCATGTGGTC 25134
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT----CCTCTGACCCCTCTA 122
|||||||| ||||| |||||||||||||| | ||||| || | | | | | ||
Sbjct 25135 TAATTCGATGCAACATGAAGAACCTTACCAGAGCTTGAAATATTGTTTTTTAACTTTGTA 25194
Query 123 GAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCT 182
| || | ||| | | | || ||| | || |||||||| ||||||
Sbjct 25195 G---TAAA--TTT--TCATAAATATATTCAGGTACATGAGACGCATGGTT---GTCAGCC 25244
Query 183 CGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGC 221
||||||||||||||||| |||||||||||||||||||||
Sbjct 25245 CGTGTCGTGAGATGTTGCGTTAAGTCCCGCAACGAGCGC 25283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503944246720
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |