Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2406 123 4e-26 seq222 78.8 2e-12 >seq2406 Length=41085 Score = 123 bits (136), Expect = 4e-26 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||| || | ||||| |||||| ||| || | ||||| |||||| | |||||| |||| Sbjct 26611 ATCAATACAGCAAAACCAACCTGGTTCAAGATGCTCTAAGCCCAGCACGCGTTCCTTATT 26552 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | | |||||| | |||||| || || ||| | ||||||||||||||| | Sbjct 26551 GGCCATTAAACAATACCACGCTTTGAGACTTTTGCGCCTCAGTGATAGGAAGAGCCGGGA 26492 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | ||||| ||| ||||| | | |||||||||| ||||||| ||||| ||| |||||| Sbjct 26491 TGGAAGGGTCAGAAAGCTGCATAGCTATGAACGTCTGGCTGCAGCAAGCAAGTAATCCCT 26432 Query 213 GTGGTAACTTTTCTGGCACCTCTAGC 238 | | |||||||| ||||||||| Sbjct 26431 CGTGCAGCTTTTCTGATACCTCTAGC 26406 >seq222 Length=5187 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 4389 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 4330 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 4329 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 4273 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 4272 CCCGTCAATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 4218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854368327392