Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq222 100 6e-19 seq2067 77.0 7e-12 >seq222 Length=5187 Score = 100 bits (110), Expect = 6e-19 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| |||| ||| ||||| || |||||||||||| ||||||||||| ||| ||| | | Sbjct 788 TCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGAAGTTTGGGCTG 847 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | ||| | ||| |||| ||| | |||||||| ||| ||| |||| ||||||| || Sbjct 848 TATTTCAATCCCAATGTGGCTGGTTCCCCTCTCAGGGCAGCTACTGATCTTCGCCTTAGT 907 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 | ||| | || |||||||||||| Sbjct 908 AAATTTTTATATTACTAACTAGCTAATC 935 >seq2067 Length=2328 Score = 77.0 bits (84), Expect = 7e-12 Identities = 81/106 (76%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 || |||||| | | |||| ||| || || || |||||||||||| |||||||||||| Sbjct 1408 CAGTGGCTG--TTAAGCTTGCGCTCACTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGG 1351 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 141 ||| || | || ||||| | | |||||| ||| || |||||||| Sbjct 1350 AGTTTGAGCAGTATCTCATTCCTAGTGTGGCTGGTCCGCCTCTCAG 1305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071960260960