Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3553 114 1e-23 seq3276 73.4 4e-11 >seq3553 Length=117791 Score = 114 bits (126), Expect = 1e-23 Identities = 140/186 (75%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTC-GAATACATTA 65 ||| ||||||| ||| |||| || || ||| |||||||| | |||| | |||||| | Sbjct 109542 GGAATTTTACTCTGAGAAAAATATAGTGTTGCAAGCAGGCTTGTTGCCCTGAATACTGCA 109483 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| |||||||| | || ||||||||| ||||||||||||| || Sbjct 109482 ACATGGAATAATGAGGTAGGACGT-CAGTCCTATTTTGTTGGTTTCTAGGACC-ATGATA 109425 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || ||||||| ||||| | ||||| || | ||| ||||| ||||||| || Sbjct 109424 ATGACTAAGGGGGATAGTTGGGGGGATTCGTATTTAACTTTCAGAGGTGGAATTCTTAGA 109365 Query 186 TTTATT 191 ||| || Sbjct 109364 TTTGTT 109359 >seq3276 Length=28627 Score = 73.4 bits (80), Expect = 4e-11 Identities = 129/182 (71%), Gaps = 12/182 (7%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTAC 66 || ||| |||||| | | |||| |||| |||||||| | | ||| |||||| | Sbjct 19626 ACCTTTTCTTTGAGACGAATAGAACGTTTCAAGCAGGCATGT-CTCACTGAATACTGAAG 19568 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 |||||||||||| ||| ||||| ||| |||||| || || | ||||| ||| Sbjct 19567 CATGGAATAATAAGATAAGACGT-CGGCTCTATTCTG-----TTGTTGGACC-AAGGTAG 19515 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | || ||| |||||||| | ||||| || || || | || |||||||| ||| Sbjct 19514 TGATTATTAGGGACAGTCGGGGACATTCGTATTTAACTGCCAGAAGT-AAATTCTTAGAT 19456 Query 187 TT 188 || Sbjct 19455 TT 19454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511981613280