Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq222 102 2e-19 seq2067 89.7 1e-15 seq1740 80.6 7e-13 seq1166 80.6 7e-13 seq134 80.6 7e-13 seq3564 75.2 3e-11 seq543 75.2 3e-11 seq336 75.2 3e-11 >seq222 Length=5187 Score = 102 bits (112), Expect = 2e-19 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||| |||||||| ||||| || |||||||||||| ||||||||||| ||| ||| | | Sbjct 788 TCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGAAGTTTGGGCTG 847 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | ||| | ||| |||||||||| |||||||| |||||| |||| |||||| Sbjct 848 TATTTCAATCCCAATGTGGCTGGTTCCCCTCTCAGGGCAGCTACTGATCTTCGCCT 903 >seq2067 Length=2328 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | |||||||| || || || |||||||||||| ||||||||||||||| Sbjct 1405 TGGCTG--TTAAGCTTGCGCTCACTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGT 1348 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | || ||||| | | ||||||||||||| |||||||| Sbjct 1347 TTGAGCAGTATCTCATTCCTAGTGTGGCTGGTCCGCCTCTCAG 1305 >seq1740 Length=3324 Score = 80.6 bits (88), Expect = 7e-13 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | |||||||| ||||| || |||||||||||| ||||||||||||||| Sbjct 1488 TGGCTG--TTAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGT 1545 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | |||| ||| | | | |||| ||||| |||||||| Sbjct 1546 TTGAGCTGTGTTTCATTCCTAATGTGCCTGGTTCGCCTCTCAG 1588 >seq1166 Length=7016 Score = 80.6 bits (88), Expect = 7e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 113 |||||| ||||| || |||||||||||| ||||||||||||||| || |||| | || Sbjct 5314 TTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGAGCCGTATTTC 5373 Query 114 AGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 | | | | |||||||||| |||||||| Sbjct 5374 ATTCCTAATGTGGCTGGTTCGCCTCTCAG 5402 >seq134 Length=8189 Score = 80.6 bits (88), Expect = 7e-13 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | |||||||| ||||| || |||||||||||| ||||||||||||||| Sbjct 5737 TGGCTG--TTAAGCTTGCGCTCATTGCATAAGATTCCCCACTGCAGCCTCCCGTAGGAGT 5794 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | || | ||| | | | |||||||||| |||||||| Sbjct 5795 TTGAGCTGTATTTCATTCCTAATGTGGCTGGTTCGCCTCTCAG 5837 >seq3564 Length=15248 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/103 (77%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | || ||||| ||||| || |||||||||||| ||||||||||||||| Sbjct 9613 TGGCTG--TTAAGCCTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGT 9556 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | || | ||| | | | |||||||||| |||||||| Sbjct 9555 TTGAGCTGTATTTCATTCCTAATGTGGCTGGTTCGCCTCTCAG 9513 >seq543 Length=1169 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/103 (77%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | ||||| || ||||| || | |||||||||| ||||||||||||||| Sbjct 319 TGGCTG--TTAAGCTTGGGCTCATTGCAGAAGAATCCCCACTGCAGCCTCCCGTAGGAGT 262 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | || | ||| | | |||||||||||| |||||||| Sbjct 261 TTGAGCTGTATTTCATTCCTAGTGTGGCTGGTTCGCCTCTCAG 219 >seq336 Length=3094 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/103 (77%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 40 TGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 99 |||||| | | |||||||| ||||| || ||||| |||||| ||||||||||||||| Sbjct 1707 TGGCTG--TTAAGCTTGCGCTCATTGCAGAAGATTCCTCACTGCAGCCTCCCGTAGGAGT 1650 Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 || | || | ||| | | | |||||||||| |||||||| Sbjct 1649 TTGAGCTGTATTTCATTCCTAATGTGGCTGGTTCGCCTCTCAG 1607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222354685632