Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq222 194 5e-47 seq1166 75.2 3e-11 >seq222 Length=5187 Score = 194 bits (214), Expect = 5e-47 Identities = 247/336 (74%), Gaps = 12/336 (4%) Strand=Plus/Minus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 |||||||||||||| |||| ||| |||| ||||||| |||||||||| | |||||| Sbjct 937 CTGATTAGCTAGTTAGTAATATAAAAATTTACTAAGGCGAAGATCAGTAGCTGCCCTGAG 878 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 |||| | | |||||||||| | ||| | || | ||||||| ||||||||||| |||||| Sbjct 877 AGGGGAACCAGCCACATTGGGATTGAAATACAGCCCAAACTTCTACGGGAGGCTGCAGTG 818 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC- 343 |||||| || ||||| || |||| ||| ||| || | ||||| || || || Sbjct 817 GGGAATCTTCTGCAATGAGCGCAAGCTTGACAGAGCGTCGTCACGTGAAGGAAGACAGCT 758 Query 344 ---CTTCGGGTCGTAAAGCTCTGT--CCTCAAGGAAGATAATGACGGTACTTGAG--GAG 396 || || ||||| ||| | | | || | ||| |||| |||| || | Sbjct 757 TATTTTTTAGTTGTAAACTTCTTTTACTTAAAAGTGAATATTGAC---ACTTAAGTAAAT 701 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 ||| |||| |||| |||||||||||||||||||| ||| || | |||||||||| Sbjct 700 AAAGTATCGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCC 641 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 ||||||||| |||||||||| || ||||||||||| Sbjct 640 GGAATTACT-GGGCGTAAAGCGTATGTAGGTGGTTT 606 >seq1166 Length=7016 Score = 75.2 bits (82), Expect = 3e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 219 CCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 ||||||||| | | |||||||| | | ||| | |||| |||||||||||||||||| Sbjct 5403 CCTGAGAGGCGAACCAGCCACATTAGGAATGAAATACGGCTCAAACTCCTACGGGAGGCT 5344 Query 279 GCAGTGGGGAATATTGCACAATGGGC 304 |||||||||||| || ||||| || Sbjct 5343 GCAGTGGGGAATCTTCTGCAATGAGC 5318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497544483968