Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq998 239 9e-61 seq479 172 1e-40 seq3479 91.5 3e-16 >seq998 Length=8601 Score = 239 bits (264), Expect = 9e-61 Identities = 246/316 (78%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC--CAGGCCCGCTTTGGCGGGTCGCCGG----CT 73 || |||||||||| |||||||||||| ||| | || |||| | | | || Sbjct 3071 GAACGAGACCTTAGCCTGCTAAATAGGGTCAGTAAC---TTCGCGGTTA-CTGTATCACT 3016 Query 74 TCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||| | | || | | | |||||||||||||||||||||||||||||| Sbjct 3015 TCTTAGAGGGACTTTGCATGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 2956 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 ||||||||||||||||||| |||||||||||||||||| | ||||| ||| | ||| Sbjct 2955 GCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATGCATGCAACGTGTTTTT-ACC 2897 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| |||||||||||||||| | | | ||||| ||||||||| |||||| Sbjct 2896 TTGGCCGACAGGTCTGGGTAATCTTTTGAGTGTGCATCGTGATGGGGATAGGTTATTGCA 2837 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| ||||||| ||||||||||||||| |||| |||| |||| ||| ||||| Sbjct 2836 ATTATTAATCTTCAAGGAGGAATGCCTAGTAGGCGCAAGTCAGCAGCTTGCGCCGATTAA 2777 Query 313 GTCCCTGCCCTTTGTA 328 ||| ||||| ||||| Sbjct 2776 GTCGCTGCCTCTTGTA 2761 >seq479 Length=267577 Score = 172 bits (190), Expect = 1e-40 Identities = 142/172 (83%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240824 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGCC 240765 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 | ||||||| | ||||||||| |||||||||| ||||||||||| |||| | | Sbjct 240764 CAACACTGATGCATGGAACGAGTTC-CAACCTTGGCCGACAGGTCTGGGTAGTCTTTTGA 240706 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273 | | ||| |||||||||| |||||||||||| |||||||||||| Sbjct 240705 GCGTGCATTGTGATGGGGATAGACTATTGCAATTATTAAGCTTCAACGAGGA 240654 >seq3479 Length=20278 Score = 91.5 bits (100), Expect = 3e-16 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||| ||||||||| | | || | | | || ||||||| ||||||||||||||||| Sbjct 12020 CTTCTAAGAGGGACTTTGTG-TCTAACGCAAAGACGTTTGAGCCAATAACAGGTCTGTGA 12078 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||| | | |||| | || | ||||||| ||||| | ||| ||||| |||| Sbjct 12079 GACCCTTATAGGCTCTGTTCTGCGCTCGCGCTATACTGATGCATGCAATGAGTT-TTCAC 12137 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTG 218 |||| |||| |||||| ||| || ||| Sbjct 12138 CTTGACCGGCAGGTCTAGGTGATATTG 12164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947164887296