Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq164 358 2e-96 seq1628 304 4e-80 seq1332 163 9e-38 seq436 141 3e-31 seq819 140 1e-30 >seq164 Length=6492 Score = 358 bits (396), Expect = 2e-96 Identities = 231/252 (92%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| || | |||||||||||||||||| ||||||| |||||||| Sbjct 50 GAATAAGTAAAACGACACTGAGGGTAGTGGTATTTCACGATCGCCGAA---GCTCCCACC 106 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||||| | |||||| || |||||||||||||||||||||||||||||||||||| Sbjct 107 TATGCTACACCCCCCAAGTCGTTCCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 166 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 226 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| Sbjct 227 TAGGGACAGTGGGAATCTCGCTAATCCATTCATGCACGTCACTAATTAGATGACAAGGCA 286 Query 425 TTTGGCTACCTT 436 |||||||||||| Sbjct 287 TTTGGCTACCTT 298 Score = 141 bits (156), Expect = 3e-31 Identities = 86/91 (95%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| Sbjct 6177 GTCATAGTTACGTCCGCCGTTAACCCGCGCTTGGTTGAATTTCATCACATTGACATTCAG 6236 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| Sbjct 6237 AGCACTGGGCAGAAATCACATTGCGTCAACA 6267 >seq1628 Length=4166 Score = 304 bits (336), Expect = 4e-80 Identities = 264/322 (82%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| Sbjct 4120 CCTTAGGACACCTGCGCTATTGTTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 4061 Query 106 ACAATGTCATCAACCCGGATCGGCCCGC---GAAGG---ACCTTAACGCCAGAAAATGGT 159 || ||||| || | |||| || | | ||||| ||||||| | || |||| | Sbjct 4060 ACTATGTCTTCCGCATTGATCAGCGCCCCAAGAAGGGGCACCTTAA-GACA-AAAACACT 4003 Query 160 CGGTGAAGACCAGT-TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATT 218 | || | || || | | | || ||||||||| || | |||||||||||||| Sbjct 4002 TGCCGAGCATGCGTCTCAACCTGACGGAATAAGTAAAACGACACTGAGGGTAGTGGTATT 3943 Query 219 TCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| ||||||| |||||||| ||| ||||||| | |||||| || |||||||||| Sbjct 3942 TCACGATCGCCGAA---GCTCCCACCTATGCTACACCCCCCAAGTCGTTCCACAAAGTCG 3886 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3885 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 3826 Query 339 TGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||||| Sbjct 3825 TGGCTGTGGTTTCGCTAGATAG 3804 >seq1332 Length=63086 Score = 163 bits (180), Expect = 9e-38 Identities = 132/160 (83%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||||||||| ||||| ||||| ||| ||| |||||||||||| Sbjct 54820 TGGGAATCTCGTTAATCCATTCATGCACGTCATCAATTATATGGCGAAGCATTTGGCTAC 54761 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 || |||| ||||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 54760 CTCAAGAACGTCATAGGTACGTTTGCCCTTAGCCCGCGCCTGGTCGAATTTAATCATATT 54701 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||| ||||||| |||||||||||| |||||||||||| Sbjct 54700 GGCATCCAGAGCAACGGGCAGAAATCAAATTGCGTCAACA 54661 >seq436 Length=1525 Score = 141 bits (156), Expect = 3e-31 Identities = 86/91 (95%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| Sbjct 1257 GTCATAGTTACGTCCGCCGTTAACCCGCGCTTGGTTGAATTTCATCACATTGACATTCAG 1198 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| Sbjct 1197 AGCACTGGGCAGAAATCACATTGCGTCAACA 1167 >seq819 Length=94173 Score = 140 bits (154), Expect = 1e-30 Identities = 172/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||| ||||||| |||||||||||||| |||| |||||| ||| |||| | |||||||| Sbjct 29370 GAGCCAAGCTCTACAGGGTCTTCTTTGCCCGTTGATTCGCGCAATCCCGCTGCCTTGGCT 29311 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 || |||||||| ||| ||| |||||| ||| | | ||||| | ||| | Sbjct 29310 TCGGCTTCGCTAGTTAGCTTGTAGATGTTGTGGGAGTCTGGCTTATCCACCCGTGCATGC 29251 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG-TTACTCCCGCCGT 462 |||||||||| ||||| | ||||||||| |||| | | ||| | ||| | ||||| | Sbjct 29250 CACTAATTAGTTGACGGGAAATTTGGCTAGCTTATGCG---CATTGTTTATTTCCGCCAT 29194 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 | |||||| |||| |||||||| | | ||||||||||||| ||| ||| Sbjct 29193 TAACCCGCAGTTGGGTGAATTTCACCGCACCAACATTCAGAGCACAGGGTAGA 29141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635139383136