Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3276 190 6e-46 seq1208 118 3e-24 seq3553 116 1e-23 >seq3276 Length=28627 Score = 190 bits (210), Expect = 6e-46 Identities = 315/462 (68%), Gaps = 62/462 (13%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||| ||| | |||| |||| |||| | ||| | |||| |||| | Sbjct 19851 TCATTCCAATTGCAAAGCATAAAAT-GCCCAGTATTGTTGTTTTTCGTCATTACCGCGAA 19909 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||| || ||||| ||||| |||||| ||| || |||||||||||||||| Sbjct 19910 GCCTTC--ATTGGGCAAATTGCGTGCCTGTTGCCTTTCTTAGAAGTGGTAGCCGTTTCTC 19967 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 || ||||||| ||||||||||||| |||||||| |||| ||| | ||| |||||||| Sbjct 19968 AGTCTCCCTCGCCGGAATCGAACCTTAATTCCCTGTTAACCGCCACTGCCACGGTAGGCC 20027 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA-- 242 | || ||| | ||||||| ||||||| ||||||||||| ||| ||| || ||| || Sbjct 20028 AATAGCCTCACGTCGAAAGCTGATAGGTCAGAAATTTGAGTGATCCACCGTGGGCCCAAA 20087 Query 243 --------------------------------------------AGGCCATGCGATTCGT 258 || || |||||| ||| Sbjct 20088 AGAAGACCCCACTCGAAAGTGGGTTTGTTTTTTATGATAAGCACAGCCCCTGCGATCCGT 20147 Query 259 TAAGTTATTATGAATCACCAAGGAGCC---CCGAAGGGCGTTGGTTTTTTATCTAATAAA 315 | ||| |||||||||||||| || | ||| | ||||||||| |||| |||||| Sbjct 20148 TCGGTTGCTATGAATCACCAAGACTCCATTCTAAAGTGGGTTGGTTTTGTATCCAATAAA 20207 Query 316 TACACCCCTTCCGAAGTCGGGGT----TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 | ||| ||| ||| ||||| | || || ||||||||| ||||||||||| || Sbjct 20208 CTGAGCCCCTCCAAAG--GGGGTGGCCTCTTCGCGTGTATTAGCCATAGAATTACCATGG 20265 Query 372 TTATCCATGT--AGTAAGGTACTATCAAATAAACGATAACTG 411 |||||||||| | |||| | ||||||||||| ||||||| Sbjct 20266 TTATCCATGTAAAAGAAGG--CCATCAAATAAACTATAACTG 20305 >seq1208 Length=67552 Score = 118 bits (130), Expect = 3e-24 Identities = 171/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171 ||||| |||||| || ||| || ||| |||| ||||| ||||| | |||||| || | | Sbjct 42010 GTAGCTGTTTCTTAGACTCTCTTTCCCGAATAGAACCTTAATTTCACGTTACATGTCGTT 41951 Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||| |||||||| | || || | ||||| ||||| | |||||| |||||||| ||| Sbjct 41950 GCCACTGTAGGCCAACACTCTGCCGTGGAAAGCTGATAAGCCAGAAACTTGAATGATCCA 41891 Query 232 TCGCCGGCTCAAGG---CCA--TGCGATTCGTTAAGTTATTATGAA-TCACCAAGGA-GC 284 |||| || ||| ||| ||| ||| ||| ||||| ||| | | || |||| | Sbjct 41890 TCGCGGGACCAAAAGAACCAACTGCTATTTGTTCAGTTACTATAACCTGACTAAGGTTGT 41831 Query 285 CCCG--AAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGG 337 | | ||| ||||||||| ||||||||||||| | ||||||| ||| |||| Sbjct 41830 ACAGTTAAGTTGGTTGGTTTTGTATCTAATAAATA-AGCCCTTCCAAAGGGGGGG 41777 >seq3553 Length=117791 Score = 116 bits (128), Expect = 1e-23 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 74 TTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCT 133 |||||||||||| ||| ||||||| ||||| |||||| | ||||| ||| ||||||||| Sbjct 109842 TTGGGTAATTTGGGCGTCTGCTGCTCTCCTTAGATGTGCTGGCCGTCTCTGAGGCTCCCT 109901 Query 134 CTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 ||||||||||||||||| ||||||||| || || | | | ||||||||| Sbjct 109902 CTCCGGAATCGAACCCTGGTTCCCCGTTGCCAGTCACTGCGACGGTAGGCCA 109953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510344009472