Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1656 253 4e-65 seq2133 132 9e-29 seq20158 116 7e-24 seq577 78.8 2e-12 >seq1656 Length=2684 Score = 253 bits (280), Expect = 4e-65 Identities = 210/250 (84%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTC-GAATACATTAGC 128 ||||||||||||| |||| ||||||||| |||||||| | | || | |||||| | ||| Sbjct 1603 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGCTTGTCGCCCTGAATACTTCAGC 1662 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||||||||| ||||||| | ||||||||||||||||||||| |||| |||||| Sbjct 1663 ATGGAATAATAAGATAGGACCTT-GGTTCTATTTTGTTGGTTTCTGGGACTAAGGTAATG 1721 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| ||||| | ||||| || ||||||||||||||||||| ||||| Sbjct 1722 ATTAATAGGGACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATTT 1781 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||||| ||||||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1782 GTTAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGA 1840 Query 309 AAGTTAGGGG 318 || |||||| Sbjct 1841 CAG-TAGGGG 1849 >seq2133 Length=2174 Score = 132 bits (146), Expect = 9e-29 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||| ||||||||||||||||| || ||||||||||||||||||||| | | Sbjct 1580 TTCGATTTTGTTGGTTTCTAGTACTAAGGTAATGATTAATAGGGATAGTTAAAGACATTC 1639 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||| |||||||||||| ||||| |||||||| | ||| ||||||||| Sbjct 1640 GTATTTAACTGTCAGCGGTGAAATTCTTAGATTTGTTGAAGACGAGCTATTGCGAAAGCA 1699 Query 275 TTCACCAAGGATGTTTTCATTAATCA 300 || ||| |||| |||||||||| || Sbjct 1700 TTTGCCATGGATTTTTTCATTAAGCA 1725 >seq20158 Length=17857 Score = 116 bits (128), Expect = 7e-24 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||| ||||| |||||| |||| || |||||||||||| |||||||| | | Sbjct 4437 GTTCAATTTTATTGGTTGCTAGTACTAAGGTAATGATTAATCGGGATAGTTAAAGACATT 4496 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || |||||| ||||||||||| ||||| |||||||| | ||| ||||||||| Sbjct 4497 TGTATTTAACTGTCAGCAGTGAAATTCTTAGATTTGTTGAAGACGAGCTATTGCGAAAGC 4556 Query 274 GTTCACCAAGGATGTTTTCATTAATCA 300 || ||| |||| |||||||||| || Sbjct 4557 ATTTGCCATGGATTTTTTCATTAAGCA 4583 >seq577 Length=5768 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 117 GAATACATTAGCATGGAATAATAG---AATAGGACGTGCGGTTCTATTTTGTTGGTTTCT 173 |||||| |||| |||||| ||| |||||||| | ||||||||||||| |||||| Sbjct 5231 GAATACTCCAGCACGGAATACTAGTAAAATAGGACC--CTGTTCTATTTTGTTAGTTTCT 5174 Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| || ||| ||||| || ||| ||||| | ||||| || ||| ||| | Sbjct 5173 AGGACCAAGACAAAGATCAATAGAGACAGTTGGGGGCATTTGTATTGAACTGTGGGAGAT 5114 Query 234 GAAATT 239 |||||| Sbjct 5113 GAAATT 5108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914896647808