Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21]
33,146 sequences; 62,832,469 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq21635 201 5e-49
seq48 118 4e-24
seq10289 91.5 6e-16
seq17376 77.0 1e-11
>seq21635
Length=3261
Score = 201 bits (222), Expect = 5e-49
Identities = 230/305 (75%), Gaps = 17/305 (6%)
Strand=Plus/Plus
Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451
||| |||| || || ||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 720 TAACGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACATGTGCGAGT 779
Query 452 GTTTGGGTG--TCAAACCC-GTGCGCGTAATGAAAGTGAACGGAGG------TGGGAA-- 500
| |||| | | ||| || ||||||||||||||| | ||| |||||
Sbjct 780 ATGCGGGTTGTTTACTCCCTGTATGCGTAATGAAAGTGAGAGTAGGGAGATTTGGGATTT 839
Query 501 --CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558
||| | | |||| ||||||| | ||| | || || | ||||||| |||
Sbjct 840 TTCCCTTTTCG---CACCTACGACCGACCACGATCT-TTGTGAGAGGTTTGAGTTGTAGC 895
Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618
| | |||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 896 ACATTTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAA 955
Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678
||| |||| ||||| |||| | ||| ||||||||||| |||||||| |||||||||||
Sbjct 956 GCCTGATGGAAGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGG 1015
Query 679 GGCGA 683
|||||
Sbjct 1016 GGCGA 1020
Score = 156 bits (172), Expect = 2e-35
Identities = 136/168 (81%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| |||||| | ||| | ||||| | | ||| |||| |||||||||||
Sbjct 285 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 344
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| |||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| ||
Sbjct 345 ACTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGAAA 404
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207
|||||||| ||||| || |||||||| || |||||||||| ||| |||
Sbjct 405 AGAGAGTT-AAAAGTACCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 451
>seq48
Length=23176
Score = 118 bits (130), Expect = 4e-24
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605
||||||| ||| | ||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 12216 TTTGAGTTGTGGCACATCTGTTAGGACCCGGAAGATGGTGAACTATGCCTGAGCAGGGTA 12275
Query 606 --AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663
||| || |||| ||| |||| |||| |||| | ||| ||||||||||| | |||
Sbjct 12276 TAAAGTTAGGCGAAAGCCTGATGGAAGCTCATAGCGATACTGACGTGCAAATCGTTTGTC 12335
Query 664 AAATTTGGGTATAGGGGCG 682
||| |||||||||||||||
Sbjct 12336 AAACTTGGGTATAGGGGCG 12354
>seq10289
Length=6057
Score = 91.5 bits (100), Expect = 6e-16
Identities = 106/142 (75%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||| || ||| |||||| || | | ||||| | | ||| ||| |||||||||||
Sbjct 141 GAGCCGCGTTCATTGGGATTGGAAAGCAAAATGCGTGATAAGTTTTACATAAAGCTAAAT 82
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| || |||||| ||| |||| || || | ||||||||||||| |||||||||
Sbjct 81 ACTGGTGCGATACCGATTGCGAACAAATACTGTAAAGGAAAGATGAAAAGGACTTTGGAA 22
Query 160 AGAGAGTTAAAAAGCACGTGAA 181
| |||||| ||||| || ||||
Sbjct 21 ATAGAGTT-AAAAGTACCTGAA 1
>seq17376
Length=350
Score = 77.0 bits (84), Expect = 1e-11
Identities = 97/131 (74%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137
||| |||| ||| ||||| || | || ||||||||||||| |||||| |||| |
Sbjct 178 TAAGTTTCCCATAACGCTAAGTACTCGCGCGAGACCGATAGCGAACAAGTCTTGTGAAGG 119
Query 138 AAAGATGAAAAGCACTTTGGA-AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|| ||||||| | | ||| | |||| |||| ||||| || ||||| || || |||||||
Sbjct 118 AAGGATGAAATGTATTTTATAGAAGAAAGTT-AAAAGTACCTGAAAATGCTGGAAGGGAA 60
Query 197 GCGCTTGCAAC 207
|| || |||
Sbjct 59 ACGACTGAAAC 49
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079289018300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |