Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21635 201 5e-49 seq48 118 4e-24 seq10289 91.5 6e-16 seq17376 77.0 1e-11 >seq21635 Length=3261 Score = 201 bits (222), Expect = 5e-49 Identities = 230/305 (75%), Gaps = 17/305 (6%) Strand=Plus/Plus Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||| |||| || || ||||||||| ||||||||||||||||||||||| | ||||||| Sbjct 720 TAACGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACATGTGCGAGT 779 Query 452 GTTTGGGTG--TCAAACCC-GTGCGCGTAATGAAAGTGAACGGAGG------TGGGAA-- 500 | |||| | | ||| || ||||||||||||||| | ||| ||||| Sbjct 780 ATGCGGGTTGTTTACTCCCTGTATGCGTAATGAAAGTGAGAGTAGGGAGATTTGGGATTT 839 Query 501 --CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | |||| ||||||| | ||| | || || | ||||||| ||| Sbjct 840 TTCCCTTTTCG---CACCTACGACCGACCACGATCT-TTGTGAGAGGTTTGAGTTGTAGC 895 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 | | |||| ||||||||||||||||||||||||||||| |||||||||| ||| |||| Sbjct 896 ACATTTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAA 955 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||| |||| ||||| |||| | ||| ||||||||||| |||||||| ||||||||||| Sbjct 956 GCCTGATGGAAGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGG 1015 Query 679 GGCGA 683 ||||| Sbjct 1016 GGCGA 1020 Score = 156 bits (172), Expect = 2e-35 Identities = 136/168 (81%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 285 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 344 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 345 ACTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGAAA 404 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| ||||| || |||||||| || |||||||||| ||| ||| Sbjct 405 AGAGAGTT-AAAAGTACCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 451 >seq48 Length=23176 Score = 118 bits (130), Expect = 4e-24 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||| ||| | ||||| ||||||| ||||||||||||||||||||| ||||| Sbjct 12216 TTTGAGTTGTGGCACATCTGTTAGGACCCGGAAGATGGTGAACTATGCCTGAGCAGGGTA 12275 Query 606 --AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||| || |||| ||| |||| |||| |||| | ||| ||||||||||| | ||| Sbjct 12276 TAAAGTTAGGCGAAAGCCTGATGGAAGCTCATAGCGATACTGACGTGCAAATCGTTTGTC 12335 Query 664 AAATTTGGGTATAGGGGCG 682 ||| ||||||||||||||| Sbjct 12336 AAACTTGGGTATAGGGGCG 12354 >seq10289 Length=6057 Score = 91.5 bits (100), Expect = 6e-16 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| || ||| |||||| || | | ||||| | | ||| ||| ||||||||||| Sbjct 141 GAGCCGCGTTCATTGGGATTGGAAAGCAAAATGCGTGATAAGTTTTACATAAAGCTAAAT 82 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| || |||||| ||| |||| || || | ||||||||||||| ||||||||| Sbjct 81 ACTGGTGCGATACCGATTGCGAACAAATACTGTAAAGGAAAGATGAAAAGGACTTTGGAA 22 Query 160 AGAGAGTTAAAAAGCACGTGAA 181 | |||||| ||||| || |||| Sbjct 21 ATAGAGTT-AAAAGTACCTGAA 1 >seq17376 Length=350 Score = 77.0 bits (84), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 ||| |||| ||| ||||| || | || ||||||||||||| |||||| |||| | Sbjct 178 TAAGTTTCCCATAACGCTAAGTACTCGCGCGAGACCGATAGCGAACAAGTCTTGTGAAGG 119 Query 138 AAAGATGAAAAGCACTTTGGA-AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||||||| | | ||| | |||| |||| ||||| || ||||| || || ||||||| Sbjct 118 AAGGATGAAATGTATTTTATAGAAGAAAGTT-AAAAGTACCTGAAAATGCTGGAAGGGAA 60 Query 197 GCGCTTGCAAC 207 || || ||| Sbjct 59 ACGACTGAAAC 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079289018300