Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq10385 232 1e-58 seq32751 107 4e-21 seq21034 96.9 7e-18 seq13249 77.0 7e-12 >seq10385 Length=4182 Score = 232 bits (256), Expect = 1e-58 Identities = 262/345 (76%), Gaps = 12/345 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | |||||||||| ||| | |||||| |||| ||||||| Sbjct 925 ATCTTCACAGACATTTCTATTTCACCGAATCTTTCTCAAAGACAGCATCCAAGTCGTTAC 984 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 985 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 1044 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||| ||||||||||||||| |||| | | | ||| ||| | || | Sbjct 1045 GTTACAGCCGCCGTTTACTGGAGCTT-ATAAAAATACTT---TTGTTAAAAACATTTTTT 1100 Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAG-CTCCTATACATCGTCTTGCGACTTAGCAGA 247 || || | ||||||| ||||||| ||||| ||||| || || || | ||||||| || Sbjct 1101 TTTACTTACCAGCACTGGGCAGGTGTCAGCCTCCT-TATATTGTGGTTAAACTTAGCGGA 1159 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 ||||||||||||| ||||||||||||||| || || ||| || | | | || Sbjct 1160 GACCTGTGTTTTTGATAAACAGTCGCTTGGATCTTTTAATTGCAACC---CTTTG---GG 1213 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || || |||| ||||||| || | |||||||||||||||||| Sbjct 1214 TATCCTTTATCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTA 1258 >seq32751 Length=333 Score = 107 bits (118), Expect = 4e-21 Identities = 125/165 (76%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGC-TCCTATACATCGTCTTGCGACTTAGCAGA 247 || || | ||||||| ||||||| |||||| |||| || || || | ||||||| || Sbjct 39 TTTACTTACCAGCACTGGGCAGGTGTCAGCCTCCT-TATATTGTGATTAAACTTAGCGGA 97 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 ||||||||||||| ||||||||||||||| || || ||| || | | | || Sbjct 98 GACCTGTGTTTTTGATAAACAGTCGCTTGGATCTTTTAATTGCAACC---CTTTG---GG 151 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || || || |||| ||||||| || | |||||||||||||||||| Sbjct 152 CATCCTTTATCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTA 196 >seq21034 Length=6209 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 4128 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 4069 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 4068 GACCGTCAGA-TTACAGCCGCCGTTTAC 4042 >seq13249 Length=866 Score = 77.0 bits (84), Expect = 7e-12 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 57 CCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 116 |||| ||||| | | || |||| |||||||| |||| | |||||||||||||| | ||| Sbjct 859 CCAAGTCGTT-CACGTTATGTGCAGGTCGGAAGTTACTCTACAAGGAATTTCGCAAACTT 801 Query 117 AGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTA 155 ||| ||||| | || |||| ||||||||| ||||| Sbjct 800 TAAACCATTATAATCACAACCGCGGTTTACTGGAGCTTA 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062047856896