Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq21635 349 6e-94 seq24033 163 5e-38 seq30467 104 4e-20 seq4579 89.7 9e-16 seq25333 86.0 1e-14 seq682 84.2 4e-14 seq949 80.6 5e-13 seq10385 78.8 2e-12 seq4518 78.8 2e-12 >seq21635 Length=3261 Score = 349 bits (386), Expect = 6e-94 Identities = 234/261 (90%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3098 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 3039 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 3038 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCTCAATGATAGGAAGAGCCGACA 2979 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2978 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 2919 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 2918 GTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGACCTAAAGGATCGATAGGCC 2859 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 2858 ATGCTTTCACAGTTTGTATTC 2838 >seq24033 Length=668 Score = 163 bits (180), Expect = 5e-38 Identities = 198/270 (73%), Gaps = 26/270 (10%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||| ||| || |||||||||| || ||||||||||||||||||| |||||| Sbjct 596 TCATCATTAGAGTACGACCAACCTGTCTCTCGATGGTCTAAACCCAGCTCACGCTCCCTA 537 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||| | ||| || |||||| || || ||||||||||||| Sbjct 536 TTGACAGGTGAACAATCCGATACTTTGAGACTTCTGCGTCTCAGTGGTAGGAAGAGCCGA 477 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||| |||| ||||||||||||||||||||||| || Sbjct 476 CATTGAAGGATTAAAATATAACGTCGCTATGAACGCTTGGCT------------TT---- 433 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| || ||||| || || |||| | |||||| || |||||| Sbjct 432 -TGTGGTAACTTTTCTTAAACATCTAG-CTGAAGTTTCTCAGCCCTAAAGAATGGATAGG 375 Query 271 CCA------CACTTTCATGGTTTGTATTCA 294 ||| | |||| | ||||||||||| Sbjct 374 CCATGCCCCCCCTTT--TAGTTTGTATTCA 347 >seq30467 Length=4772 Score = 104 bits (114), Expect = 4e-20 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 158 GGATCAAAAAGCAACGTCGCTAT----GAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 1 GGATCAAAAAGCAACGTCGCTATCTATGAACGCTTGGCTCCCACAAGCCAATTATCCCTG 60 Query 214 TGGTAACTTTTCTGGCACCTCTAGC 238 ||| | ||||| || | |||||||| Sbjct 61 TGGCACCTTTTATGACGCCTCTAGC 85 >seq4579 Length=1061 Score = 89.7 bits (98), Expect = 9e-16 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||| |||||||| ||| ||||||||| ||||||| | | |||||| Sbjct 1 GAACGCTTGGCTGCTACAAGCCAATTACTTCTGTGGTAATTTTTCTGCCGCTTCTAGCTG 60 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT--CATGGTTTGTATTC 293 ||| || | | |||||||||||||||||| |||| ||| ||||||||| Sbjct 61 AAAACTTTTAAGACGTAAAGGATCGATAGGCCATGCTTTTGCAT--TTTGTATTC 113 >seq25333 Length=447 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||| ||||| ||| ||||| | |||| ||||||||| || ||||||||||| Sbjct 75 TCATCGGTAGGGGAAAACGAACATGTCTTACGACGCTCTAAACCCGGCACACGTTCCCTA 134 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 || | | |||||||||| || ||| Sbjct 135 TTGGGGAATGAACAATCCGACACTT 159 >seq682 Length=5150 Score = 84.2 bits (92), Expect = 4e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||||||| ||||||| ||| ||||| ||| ||||||| | | |||||| Sbjct 5150 TGAACGCTTGGCTGCTACAAGCCTATTACTTCTGTGATAATTTTTCTGCCGCTTCTAGCT 5091 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || | | |||||||||||||||||| |||| |||||||||| Sbjct 5090 GAAAACTTTTAAGCCATAAAGGATCGATAGGCCATGCTTTTGCAGTTTGTATTC 5037 >seq949 Length=4088 Score = 80.6 bits (88), Expect = 5e-13 Identities = 94/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||||| |||||| | |||||||| ||| ||||| ||||||| ||||||||||||| | Sbjct 3964 CAGTAGG-TAAAACCAGCCTGTCTCGCGACTGTCTACACCCAGCGCACGTTCCCTATTGG 4022 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 || ||||| | ||| | || ||| || | | ||||||||||| ||||| Sbjct 4023 CATGTTGGCAATCTGCCCCTTTGATACTTTTGCGTCTCAACGCTAGGAAGAGCCAACATC 4082 Query 155 GAAGGA 160 |||||| Sbjct 4083 GAAGGA 4088 >seq10385 Length=4182 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 399 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 458 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 459 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 515 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 516 CCCGTCAATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 570 >seq4518 Length=1081 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||| |||| || |||||||||| || ||||||||||||||||||| ||| || Sbjct 1001 TCATCGTTAGAGTAAGACCAACCTGTCTCTCGATGGTCTAAACCCAGCTCACGCTCCATA 1060 Query 91 TTAGTGGGTGAACAATCC 108 || |||||||||||| Sbjct 1061 TTGACAGGTGAACAATCC 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854116800576