Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq10385 136 1e-29 >seq10385 Length=4182 Score = 136 bits (150), Expect = 1e-29 Identities = 192/265 (72%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 |||||||||| | ||| | || | ||||||||||||||||||| |||||||||||| || Sbjct 3478 GCCACATTGGGATTGAAATACAGCCCAAACTCCTACGGGAGGCTGCAGTGGGGAATCTTC 3537 Query 295 CACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT---TCGGGT 351 ||||| || |||| ||| ||| || | |||| || || || | | || Sbjct 3538 TGCAATGAGCGCAAGCTTGACAGAGCGTCGTCACGTGGAGGAAGACAGCTTAATTATAGT 3597 Query 352 CGTAAAGCTCTGT--CCTCAAGGAAGATAATGACGGTACTTGAGGAGG--AAGCCCCGGC 407 ||||| ||| | | | || | ||| |||| |||| || | ||| |||| Sbjct 3598 TGTAAACTTCTTTTGCTTAAAAGTGAATATTGAC---ACTTAAGTAAATAAAGTATCGGC 3654 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 |||| |||||||||||||||||||| ||| || | ||||||||||||||||||| | Sbjct 3655 AAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTACT-G 3713 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTT 492 ||||||||| || ||||||||||| Sbjct 3714 GGCGTAAAGCGTATGTAGGTGGTTT 3738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497103605504