Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10385 105 2e-20 >seq10385 Length=4182 Score = 105 bits (116), Expect = 2e-20 Identities = 228/335 (68%), Gaps = 17/335 (5%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 3651 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 3710 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||||||||||| || ||||||||| |||| | | | | || || | || Sbjct 3711 CTGGGCGTAAAGCGTATGTAGGTGGT---TTAAAT-ATATTTTTAA----ATAAATAAAA 3762 Query 139 CCCGGGA-CTGCTTTT------GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 | | || |||| ||| | ||||||| | ||| || |||| Sbjct 3763 CTATATATATGTTTTTTTTAAAAAAATTATTAAACTAGAGTCTGTTAAGGGTAAAAGGAA 3822 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || | | | || ||||||||| ||||| | | ||| |||| |||||||| | Sbjct 3823 TTTTTTGAGGAGTAGTGAAATGCAAAGATACAAAAAAGAAGACCAAAAGCGAAGGCATTT 3882 Query 252 TGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 | ||||| | || ||| |||||||| |||||| || |||||| ||||||||||| Sbjct 3883 TACTGGAGCAGT-ACTAACACTGAGATACGAAAGTTAAGGTAGCAAATGGGATTAGATAC 3941 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 || |||||| | |||||||||| ||||| || Sbjct 3942 CCCAGTAGTCTTAACTGTAAACGATGGATACTCGG 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202801187328