Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq21635 614 2e-173 seq24033 176 1e-41 seq26576 149 2e-33 seq20884 140 1e-30 seq10147 125 2e-26 seq13983 111 5e-22 seq15995 102 3e-19 seq18360 100 9e-19 seq20121 84.2 7e-14 seq9995 84.2 7e-14 >seq21635 Length=3261 Score = 614 bits (680), Expect = 2e-173 Identities = 456/529 (86%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 2804 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGCTATT 2745 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| |||| || | |||| Sbjct 2744 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTGTGTCTTCCGCATTGATC 2685 Query 127 GGCCCGCGAAGGA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 || | ||||| |||||| || | || | || | | | || || ||| | Sbjct 2684 AGCGCCAGAAGGCGCCTTAAGGCAAAAACACATGCGTAGCATGC--GTCTCAACTTGACG 2627 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| || | |||||||||||||||||| ||||||| |||||||| Sbjct 2626 GAATAAGTAAAACGACACTGAGGGTAGTGGTATTTCACGATCGCCGAA---GCTCCCACC 2570 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2569 TATTCTACACCCCCCAAGTCATTCCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 2510 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2509 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGA 2450 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2449 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCA 2390 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| Sbjct 2389 TTTGGCTACCTTAAGAACGTCATAGTTACGTCCGCCGTTAACCCGCGCTTGATTGAATTT 2330 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2329 CATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 2281 >seq24033 Length=668 Score = 176 bits (194), Expect = 1e-41 Identities = 234/322 (73%), Gaps = 15/322 (5%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCG---TTA 64 ||||| || ||| ||| |||| |||||| |||| || ||||| ||||||| ||| Sbjct 314 TTTTGGTCGACATGAGCTTTCCGTTCTCATTGAGCTTGCCCTAGGATACCTGCGCTATTA 255 Query 65 TGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGA 124 | |||| ||| ||||||| | ||||||||||||| |||||||| ||| || | | || Sbjct 254 TTGTTTCACAAATGTGCCACTCCAGCCAAACTCCTCACCTGACTGTGTGTTCCGCACTGA 195 Query 125 TCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCA---GT-TCCGCTT 180 || || | ||| | |||||| || | | | |||||| || || || ||| Sbjct 194 TCAGCGCCCGAGGCGCCTTAAGGCAAAACCACA-----TGAAGATCATATGTCTCAACTT 140 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCC 240 | | |||||||| || ||| |||||| |||| || | | ||||| ||| Sbjct 139 GACGAAATAAGTAAACCGACACTAATCGTAGTGATATTCCATTATCTCCGAA---GCTTT 83 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||| |||||| || | | |||||||| |||||||||| |||||||||||||||||| | Sbjct 82 CACCTATTCTGCAACCCCCAAGTCATCCCACAAAGTCGAGCTAGAGTCAAGCTCAACAAG 23 Query 301 GTCTTCTTTCCCCGCTGATTCC 322 |||||||||||||||||||||| Sbjct 22 GTCTTCTTTCCCCGCTGATTCC 1 >seq26576 Length=343 Score = 149 bits (164), Expect = 2e-33 Identities = 115/136 (85%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTG---TGGTTTCGCTAGATAGTAGATAGGGACA 372 || ||| ||| |||||||||||||||||| ||| ||| |||| ||||| ||||||| Sbjct 136 TGCTTCTGCCGAGCCCGTTCCCTTGGCTGCCGTGGGTTCTCTAGGTAGTAAGTAGGGACG 77 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 || ||||||||||||||| ||||||| |||||||||||| ||||||| || |||||||| Sbjct 76 GTTGGAATCTCGTTAATCTTTTCATGCACGTCACTAATTATATGACGAAGCTTTTGGCTA 17 Query 433 CCTTAAGAGAGTCATA 448 |||||||| |||||| Sbjct 16 CCTTAAGAACGTCATA 1 >seq20884 Length=7167 Score = 140 bits (154), Expect = 1e-30 Identities = 114/137 (83%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 |||| ||||| ||| || ||||||||||||||||||||||||| |||||||||||||||| Sbjct 240 CACAGAGTCGCACTCGACTCAAGCTCAACAGGGTCTTCTTTCCTCGCTGATTCCGCCAAG 181 Query 329 CCCGT---TCCCTTG---GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||||| || ||| | ||||| |||||| | ||||||||| ||||||| ||| | Sbjct 180 CCCGTCACTCTTTTGTCTGTTGTGGGTTCGCTCGCTAGTAGATAAAGACAGTGAAAATAT 121 Query 383 CGTTAATCCATTCATGC 399 |||||||||||||||| Sbjct 120 TGTTAATCCATTCATGC 104 >seq10147 Length=11392 Score = 125 bits (138), Expect = 2e-26 Identities = 99/118 (84%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTG---TGGTTTCGCTAGATAGTAGATAGGGACA 372 || ||| ||| |||||||||||||||||| ||| ||| |||||||| | ||||||| Sbjct 11204 TGCTTCTGCCGAGCCCGTTCCCTTGGCTGCCGTGGGTTCTTTAGATAGTGGGTAGGGACG 11145 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 || |||||||||||||||| ||||||| |||||| ||||| ||||||| || |||||| Sbjct 11144 GTCGGAATCTCGTTAATCCTTTCATGCACGTCACGAATTATATGACGAAGCTTTTGGC 11087 >seq13983 Length=718 Score = 111 bits (122), Expect = 5e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||| |||||||| ||||||||||| | ||||||| |||| ||||||||| |||||||| Sbjct 1 TTACGTCCGCCGTTAACCCGCGCTTGATAGAATTTCATCACATTGACATTCCGAGCACTG 60 Query 510 GGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| |||||||||| Sbjct 61 GGCAGAAATCACACTGCGTCAACA 84 >seq15995 Length=468 Score = 102 bits (112), Expect = 3e-19 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC-TCCCGC-CGTTTACCCGCG 471 ||| ||||||||||||||||||| ||| ||||||||||| ||| || |||| ||| | Sbjct 468 ATGGCGAGGCATTTGGCTACCTTTAGAACGTCATAGTTACGTCCGGCGCGTTAACCTACA 409 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||| |||| |||| |||| ||||||||||||||||||| || || Sbjct 408 CTTTATTGAGTTTCATCACATTGACATTCAGAGCACTGGCCAAAA 364 >seq18360 Length=282 Score = 100 bits (110), Expect = 9e-19 Identities = 183/261 (70%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 |||||| ||||||| ||| ||||||| || ||| | ||| |||| ||||||||| Sbjct 251 AGATTTTTGTTCTCATTGACCTTGCCTTAGGGCATCTGTGCTATTGTTTCACAGATGTGT 192 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGC-CCGCGAAGGAC 140 ||| |||| ||||||||||||||||| ||||| || | |||| || || || | | Sbjct 191 CGCTCCAGGCAAACTCCCCACCTGACTATGTCTTCCGCATTGATCAGCGCCAGGAGGCAT 132 Query 141 CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCATTGATTAAGTaaaaaaa 199 ||||| | || ||| | | || || || || ||| | || |||||||| | Sbjct 131 CTTAA-GTCACAAACACAT-GCAGAGGATGCGTCTCAACTTGACGGAACAAGTAAAACGA 74 Query 200 CGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCT- 258 | | ||||| ||||| || || ||| | |||||| ||||||||| | || Sbjct 73 CACTGAGGGTTGTGGT-----ACGATCGTTGAA---GTTCCCACCTATTCTACATCCCTC 22 Query 259 CAAGTCATTTCACAAAGTCGG 279 ||||||||| ||||||||||| Sbjct 21 CAAGTCATTCCACAAAGTCGG 1 >seq20121 Length=19147 Score = 84.2 bits (92), Expect = 7e-14 Identities = 82/104 (79%), Gaps = 9/104 (9%) Strand=Plus/Plus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT---TCCCTTGGC---TGTGGTTTCGCTA 355 |||||||||| ||||||||||||| ||||||| || ||| | ||||| |||||| Sbjct 1 TCTTCTTTCCTCGCTGATTCCGCCCAGCCCGTCACTCTTTTGTCTCTTGTGGGTTCGCTC 60 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 | |||||| | || |||| |||| | |||||||||||||||| Sbjct 61 GGTAGTAG---GTGAAAGTGAGAATATTGTTAATCCATTCATGC 101 >seq9995 Length=26794 Score = 84.2 bits (92), Expect = 7e-14 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACT--AGAGTCAAGCT 293 ||||| | |||||||||| | || |||| |||||||||||||| ||||||||||| Sbjct 8342 GCTCCAATCTATTCTACACTGCAATAGACATTCCACAAAGTCGGACTCGAGAGTCAAGCT 8283 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT-TCCCTTGGCTGT 345 ||||| | ||||||| || ||||||| |||| | || ||||||||||| Sbjct 8282 CAACAAG---ATCTTTCCGCGATGATTCCTTCAAGTCTGTCCCCCTTGGCTGT 8233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634657996608