Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq10385 140 1e-30 seq21034 100 1e-18 >seq10385 Length=4182 Score = 140 bits (154), Expect = 1e-30 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 372 AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 431 |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 964 AGACAGCATCCAAGTCGTTACACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 1023 Query 432 CGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||| ||| ||||||||||| |||||||||||||| |||| Sbjct 1024 CGCTACCTTTGGACCGTTATAGTTACAGCCGCCGTTTACTGGAGCTT 1070 >seq21034 Length=6209 Score = 100 bits (110), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||| ||| ||||||||| |||||| |||||| ||||| ||||||||||||||||| Sbjct 4140 GAGACATTAGGAAAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATT 4081 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 | |||||||| ||| || | | |||| ||||||||||| Sbjct 4080 TTGCTACCTTTGGACCGTCAGA-TTACAGCCGCCGTTTAC 4042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701835722496