Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1656 529 5e-148 seq15653 181 3e-43 seq577 179 1e-42 seq9898 143 8e-32 seq13472 77.0 1e-11 >seq1656 Length=2684 Score = 529 bits (586), Expect = 5e-148 Identities = 428/507 (84%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||| || | |||| ||||||||| ||||| | ||||||||||| Sbjct 1374 TCATTCCAATTACA-GAACAAAAAATGCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 1316 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1315 GCTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 1256 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 1255 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCACTGCCACGGTAGGC 1196 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||||| ||||||| ||||||| |||||| ||||| || ||||| ||| ||| Sbjct 1195 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAAAGATATATCGCGGGC-CAA 1137 Query 244 GGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC-CCGAAGGGCGTTGGT 300 |||| |||||| |||| |||| ||||||||||| ||| || | ||| | |||||| Sbjct 1136 AGCCAACTGCGATCCGTTCGGTTACTATGAATCACCCAGGCTCCACAAAAGTGGGTTGGT 1077 Query 301 TTTTTATCTAATAAATACACCCCTTCC---GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 ||| ||||||||||| ||| ||| ||| |||| || | || |||||||||||| Sbjct 1076 TTTGTATCTAATAAACACAGCCCCTCCAGAGAAGGAGGCG-ATTGCGCATGTATTAGCCA 1018 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||||| ||||||||||||| ||| || ||||||||||| ||||||| ||||| Sbjct 1017 TAGAATTACCATGGTTATCCATGTA-AAAGTGACCATCAAATAAACTATAACTGTTTTAA 959 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 958 TGAGCCATTCGCAGTTTCACCGTATA-AAAGCTTATACTTAGACATGCATGGCTTAATCT 900 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 899 TTGAGACAAGCATATGACTACTGGCAG 873 >seq15653 Length=500 Score = 181 bits (200), Expect = 3e-43 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 256 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAA 315 |||| |||| ||||||||||| ||| | | | | ||||||| | ||||||||| Sbjct 1 CGTTCGGTTACTATGAATCACCCTGGATCTACAATATGGGTTGGTTGTGCATCTAATAAG 60 Query 316 TACA-CCCCTTCCGAAGT-CGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 ||| |||||| |||| | || || |||||||||||| | ||| |||| | || Sbjct 61 CACAGCCCCTTTAGAAGAGCAGGCGATTGCGCATGTATTAGCCATGAAATAACCATGATT 120 Query 374 ATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 | ||||| | || | | |||||||||| ||||||| ||||||||| | ||||||||| Sbjct 121 AGCCATGCAA-AATGAATCATCAAATAAATTATAACTGTTTTAATGAGGCGTTCGCAGTT 179 Query 434 TCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||||||||| || |||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 180 TCACTGTATAAAT-GCTTATACTTAGACATGCATGGCTTAATCTTTAAAACAACCATATG 238 Query 494 ACTACTGGCAG 504 ||| | |||| Sbjct 239 GCTATTAGCAG 249 >seq577 Length=5768 Score = 179 bits (198), Expect = 1e-42 Identities = 210/277 (76%), Gaps = 9/277 (3%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||| || | || |||| | ||| ||| ||||| | | ||||||||| Sbjct 5497 TCATTCCAACTATATAAC--AAAAAATGCCTCTATTGTTATTTCTCGCCACTACCTCAAA 5554 Query 65 GT-GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | || |||||||||||||||||||||||||| ||||| | |||||| ||||||||| Sbjct 5555 GAAGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCGTCCTTAGTTGTGGTTGCCGTTTCT 5614 Query 124 CAGG--CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||| ||| ||||| ||||||||| ||| |||||||||||||||| | ||| | ||| Sbjct 5615 CAGGCTCTCTCTCTCTGGAATCGAAGCCT-ATTCCCCGTTACCCGTCACTGCCAAGATAG 5673 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| | |||||| ||||||| ||| | |||||| ||||| || | ||| ||| Sbjct 5674 GCCA--ACCCTACCGTCGAAAGCTGACGTGTCAGAAACTTGAAAGATACGTCGGGGGCCG 5731 Query 242 AAGGCCA-TGCGATTCGTTAAGTTATTATGAATCACC 277 ||| | | ||||| |||| |||| ||||||||||| Sbjct 5732 AAGCCAACTGCGACCCGTTCGGTTACTATGAATCACC 5768 >seq9898 Length=204 Score = 143 bits (158), Expect = 8e-32 Identities = 156/205 (76%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||| || ||||| |||||| ||| | ||| |||| ||| Sbjct 1 AGGCTCCCTCTCCGGAATCGAACGCTGATTCCTCGTTACACGTCACTGCCACGGTATGCC 60 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||| | || |||| || |||| |||||| |||| || |||| ||| ||| Sbjct 61 AATACCCTAGCGTCAAAAGCTGCTAGGTCAGAAACGTGAAAGATATATCGTGGGC-CAAA 119 Query 245 GCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 |||| |||||| |||| ||| ||||||| ||| || || | ||| | |||||||| Sbjct 120 GCCAACTGCGATACGTTCGATTACTATGAATAACCCAGACTCCACAAAGTGGGTTGGTTT 179 Query 303 TTTATCTAATAAATACACCCCTTCC 327 | |||||||||| ||| ||| ||| Sbjct 180 TAAATCTAATAAACACAGCCCCTCC 204 >seq13472 Length=818 Score = 77.0 bits (84), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 7/149 (5%) Strand=Plus/Minus Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCA-TGCGATTCGTTAAGTTATTATGAATCACCA 278 ||||| || ||||| ||| ||| | | |||||| |||| |||| ||||||||||| Sbjct 816 TTGAAAGATATATCGCGGGCCGAAGCCAACTGCGATCCGTTCGGTTACTATGAATCACCC 757 Query 279 AGGAGCCCCG--AAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTC 333 ||| || | ||| | ||||||||| ||||||||||| ||| ||| ||| |||| Sbjct 756 AGGCTCCACATAAAGTGGGTTGGTTTTGTATCTAATAAACACAGCCCCTCCAGAGAAGGA 697 Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAA 362 || | | |||||||||||| ||||| Sbjct 696 GGCG-AGTGCGCATGTATTAGCCATAGAA 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509899362816