Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30048 138 9e-28 seq20184 104 2e-17 >seq30048 Length=11763 Score = 138 bits (152), Expect = 9e-28 Identities = 254/376 (68%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || || || ||||| || |||| |||||| || | || |||| ||| || | || Sbjct 11229 TCAGCAAGCCCTTGGACGCCAAGACCGATCGGCCTGTGGCGCAGGTTGCTTCGATTTGCT 11170 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGC 65932 || || || ||||| ||||||| ||||| || ||||| ||||| |||| || | Sbjct 11169 TCGGGAACCGGGTAATAATTGAGGTCGATGATTTTGTTCAAGTTGCGCGTCATGACTTTG 11110 Query 65933 ACGATACGTCGCAATTGTTCGAAATCAAAA----TGTTTAGGACGATCGGGAGTGCCGGA 65988 ||||| | | | ||||| | |||| | ||| |||| Sbjct 11109 ACGATCTTTTTGAGCTTCTCGAAGTTAAAAGACTTCTTTTCGACGT-------------- 11064 Query 65989 CACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 | ||||| |||||| | || |||||| ||||||||||| || | |||||||||| Sbjct 11063 --CAACAAAGCGGGGAAGAGAAACAGATGCAAGGTTGCAGACGGCAACCTCGTCAGGACT 11006 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 || |||| || | |||| ||| ||||| ||| |||| || || ||||| ||||| || Sbjct 11005 TGTGTACTGCACTACTTCGCAGCAGAGATTGCTGGAGCGAATCGTCCCCAAGTTCTGCTG 10946 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || || || || || ||||| || ||||| | |||| | ||||| || ||||||| || Sbjct 10945 GTTGCTTTTCCGGTTACATGCGTCTTTGTAGAGCATGAAAGGAGTCCCTGTCTCAATCTG 10886 Query 66169 GGACTCAATGATGGCG 66184 |||| || ||||||| Sbjct 10885 AGACTGAAGGATGGCG 10870 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| ||| || | || || ||||| |||||| ||| ||||||||||| || Sbjct 10540 ACACGGTTCATGAAGATGTCGGGAATCCAAAGGGCGGGGAAAAGATCGCGTGCGCGCATT 10481 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 || || | |||||||||||||| | ||| || || ||||| ||||| | |||||| || Sbjct 10480 TCTTCTTTTCCGTGATTTTTGCGGATGTCCAGAAATTCAAAAATGTCCGAATGCCACGGC 10421 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || ||||| | || || ||| | || |||||||| || || |||||||| || | Sbjct 10420 TCGAGGTAAACCGCCAAGCTTCCCTTCCGCTTGCCGCCGCCCTGATCGACGTAACGCGAC 10361 Query 66512 ACATTGTTGAAGAC 66525 ||| ||||| || Sbjct 10360 GCATCATTGAAAAC 10347 >seq20184 Length=17086 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGA- 61834 || |||||||| |||||||||||||| || || || ||| ||| | | |||| ||| Sbjct 3915 CTTATGTCGCAATATATTGAATTTGTGGCTGATCGCCTGCTGGGCTGTCTTGGCGCTGAT 3974 Query 61835 -AGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 ||| ||| || |||| ||||| ||||| || |||||| | ||||| || | || Sbjct 3975 AAGC---TCTTCCATTCGAAGAACCCGTTTGACTTTATGGACCTCATTTCTCTCCAGGGG 4031 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || ||||||||||| |||||||| || ||||| |||||| Sbjct 4032 AAAACGAATTTTTTTGAGAAACGCGTTGGCGATTATCAA 4070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397407395697440