Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3816 235 1e-59 seq1834 235 1e-59 seq4665 230 5e-58 seq4167 96.9 7e-18 seq2760 96.9 7e-18 seq2036 96.9 7e-18 seq1514 78.8 2e-12 >seq3816 Length=5097 Score = 235 bits (260), Expect = 1e-59 Identities = 267/353 (76%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | ||||| |||| ||| || |||||| |||| ||||||| Sbjct 1049 ATCTTCACAGACATTTCTATTTCGCCGAATCTTTTTCCAAGACAGCATCCAAGTCGTTAC 1108 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1109 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 1168 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||| ||||||||||||||| ||||| | | || | | || || | | Sbjct 1169 GTTACAGCCGCCGTTTACTGGAGCTTA--TAAAAATATTATAATTATC-AATA-TTTTTT 1224 Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 1225 TTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTAATTACACTTAGCGGAG 1284 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGC 308 || |||||||||| ||||||||||||||| || || ||| | | | | | | | Sbjct 1285 ACTTGTGTTTTTGATAAACAGTCGCTTGGATCTCTTTATTGCAGTC---CTTTG---GAC 1338 Query 309 ACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | || || |||| ||||||| || | |||||||||||||||||| || |||| Sbjct 1339 ATCCTTTTTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 1391 >seq1834 Length=313589 Score = 235 bits (260), Expect = 1e-59 Identities = 267/353 (76%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | ||||| |||| ||| || |||||| |||| ||||||| Sbjct 122048 ATCTTCACAGACATTTCTATTTCGCCGAATCTTTTTCCAAGACAGCATCCAAGTCGTTAC 122107 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 122108 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 122167 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||| ||||||||||||||| ||||| | | || | | || || | | Sbjct 122168 GTTACAGCCGCCGTTTACTGGAGCTTA--TAAAAATATTATAATTATC-AATA-TTTTTT 122223 Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 122224 TTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTAATTACACTTAGCGGAG 122283 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGC 308 || |||||||||| ||||||||||||||| || || ||| | | | | | | | Sbjct 122284 ACTTGTGTTTTTGATAAACAGTCGCTTGGATCTCTTTATTGCAGTC---CTTTG---GAC 122337 Query 309 ACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | || || |||| ||||||| || | |||||||||||||||||| || |||| Sbjct 122338 ATCCTTTTTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 122390 Score = 111 bits (122), Expect = 3e-22 Identities = 129/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 189 TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 112672 TTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTAATTACACTTAGCGGAG 112731 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGC 308 || |||||||||| ||||||||||||||| || || ||| | | | | | | | Sbjct 112732 ACTTGTGTTTTTGATAAACAGTCGCTTGGATCTCTTTATTGCAGTC---CTTTG---GAC 112785 Query 309 ACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | || || |||| ||||||| || | |||||||||||||||||| || |||| Sbjct 112786 ATCCTTTTTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 112838 >seq4665 Length=34750 Score = 230 bits (254), Expect = 5e-58 Identities = 267/354 (75%), Gaps = 11/354 (3%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | ||||| |||| ||| || |||||| |||| ||||||| Sbjct 4313 ATCTTCACAGACATTTCTATTTCGCCGAATCTTTTTCCAAGACAGCATCCAAGTCGTTAC 4254 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4253 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 4194 Query 129 GTTAC-GGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||| | |||||||||||||| ||||| | | || | | || || | | Sbjct 4193 GTTACAGCCCGCCGTTTACTGGAGCTTA--TAAAAATATTATAATTATC-AATA-TTTTT 4138 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 4137 TTTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTAATTACACTTAGCGGA 4078 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 || |||||||||| ||||||||||||||| || || ||| | | | | | | Sbjct 4077 GACTTGTGTTTTTGATAAACAGTCGCTTGGATCTCTTTATTGCAGTC---CTTTG---GA 4024 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 || || || |||| ||||||| || | |||||||||||||||||| || |||| Sbjct 4023 CATCCTTTTTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 3970 Score = 230 bits (254), Expect = 5e-58 Identities = 267/354 (75%), Gaps = 11/354 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | ||||| |||| ||| || |||||| |||| ||||||| Sbjct 30409 ATCTTCACAGACATTTCTATTTCGCCGAATCTTTTTCCAAGACAGCATCCAAGTCGTTAC 30468 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 30469 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 30528 Query 129 GTTAC-GGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||| | |||||||||||||| ||||| | | || | | || || | | Sbjct 30529 GTTACAGCCCGCCGTTTACTGGAGCTTA--TAAAAATATTATAATTATC-AATA-TTTTT 30584 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 30585 TTTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTAATTACACTTAGCGGA 30644 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 || |||||||||| ||||||||||||||| || || ||| | | | | | | Sbjct 30645 GACTTGTGTTTTTGATAAACAGTCGCTTGGATCTCTTTATTGCAGTC---CTTTG---GA 30698 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 || || || |||| ||||||| || | |||||||||||||||||| || |||| Sbjct 30699 CATCCTTTTTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 30752 >seq4167 Length=2538 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 862 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 921 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 922 GACCGTCAGA-TTACAGCCGCCGTTTAC 948 >seq2760 Length=14445 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 1728 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 1669 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 1668 GACCGTCAGA-TTACAGCCGCCGTTTAC 1642 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 7940 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 7881 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 7880 GACCGTCAGA-TTACAGCCGCCGTTTAC 7854 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 14151 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 14092 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 14091 GACCGTCAGA-TTACAGCCGCCGTTTAC 14065 >seq2036 Length=3771 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 3459 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 3400 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 3399 GACCGTCAGA-TTACAGCCGCCGTTTAC 3373 >seq1514 Length=331139 Score = 78.8 bits (86), Expect = 2e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTG 148 |||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 35686 GGAATTTCGCTACCTTTGGACCGTTATAGTTACAGCCGCCGTTTACTG 35733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062350439040