Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4665 214 5e-53 seq3816 214 5e-53 seq1834 140 1e-30 seq2007 95.1 4e-17 >seq4665 Length=34750 Score = 214 bits (236), Expect = 5e-53 Identities = 271/367 (74%), Gaps = 18/367 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 899 TACGCTCGCAAGAGTGAAACTTAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 840 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT----CCTCTGACC 116 |||||||||||||| | ||||||||||||||||||| | ||||| || | | | Sbjct 839 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAATATAGGTTTTTAAA 780 Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176 | || ||| | ||| || || | ||||||| ||||||| ||||| Sbjct 779 AATTTA---ATAAATTTTT---ATTAATATAAC-CATCTACAGGTGGTGCATGGCTGTCG 727 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 726 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGTATCCCTTATTTAAAG 667 Query 237 TT-GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 || ||| |||| || || || || | | || ||||||||| Sbjct 666 TTAAATATCTTTAAAAACTGC-CTATATTTTTTAT-----ATAAAATAAGGAGGAAGGAA 613 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||| ||||||| || |||||||| ||||| | ||||||| ||||||||||||||||| Sbjct 612 TGGAAAACGTCAAGTCCTCATGCCCTTTATGCTCTGGGCTATACACGTGCTACAATGGAT 553 Query 356 AATACAA 362 |||||| Sbjct 552 GATACAA 546 Score = 214 bits (236), Expect = 5e-53 Identities = 271/367 (74%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 33823 TACGCTCGCAAGAGTGAAACTTAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 33882 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT----CCTCTGACC 116 |||||||||||||| | ||||||||||||||||||| | ||||| || | | | Sbjct 33883 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAATATAGGTTTTTAAA 33942 Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176 | || ||| | ||| || || | ||||||| ||||||| ||||| Sbjct 33943 AATTTA---ATAAATTTTT---ATTAATATAAC-CATCTACAGGTGGTGCATGGCTGTCG 33995 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 33996 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGTATCCCTTATTTAAAG 34055 Query 237 TT-GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 || ||| |||| || || || || | | || ||||||||| Sbjct 34056 TTAAATATCTTTAAAAACTGC-CTATATTTTTTAT-----ATAAAATAAGGAGGAAGGAA 34109 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||| ||||||| || |||||||| ||||| | ||||||| ||||||||||||||||| Sbjct 34110 TGGAAAACGTCAAGTCCTCATGCCCTTTATGCTCTGGGCTATACACGTGCTACAATGGAT 34169 Query 356 AATACAA 362 |||||| Sbjct 34170 GATACAA 34176 >seq3816 Length=5097 Score = 214 bits (236), Expect = 5e-53 Identities = 271/367 (74%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 4460 TACGCTCGCAAGAGTGAAACTTAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 4519 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT----CCTCTGACC 116 |||||||||||||| | ||||||||||||||||||| | ||||| || | | | Sbjct 4520 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAATATAGGTTTTTAAA 4579 Query 117 CCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCG 176 | || ||| | ||| || || | ||||||| ||||||| ||||| Sbjct 4580 AATTTA---ATAAATTTTT---ATTAATATAAC-CATCTACAGGTGGTGCATGGCTGTCG 4632 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 4633 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGTATCCCTTATTTAAAG 4692 Query 237 TT-GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 || ||| |||| || || || || | | || ||||||||| Sbjct 4693 TTAAATATCTTTAAAAACTGC-CTATATTTTTTAT-----ATAAAATAAGGAGGAAGGAA 4746 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||| ||||||| || |||||||| ||||| | ||||||| ||||||||||||||||| Sbjct 4747 TGGAAAACGTCAAGTCCTCATGCCCTTTATGCTCTGGGCTATACACGTGCTACAATGGAT 4806 Query 356 AATACAA 362 |||||| Sbjct 4807 GATACAA 4813 >seq1834 Length=313589 Score = 140 bits (154), Expect = 1e-30 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 115907 TACGCTCGCAAGAGTGAAACTTAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 115966 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| | ||||||||||||||||||| | ||||| || Sbjct 115967 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAAT 116013 >seq2007 Length=165351 Score = 95.1 bits (104), Expect = 4e-17 Identities = 155/217 (71%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 |||||| ||||||| |||||||||| ||| |||||||||| ||||||||||||| | Sbjct 53077 GCAAGGGTGAAACTTAAAGGAATTGGAAGGGGTTCGCACAAGCGATGGAGCATGTGGTCT 53018 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT----CCTCTGACCCCTCTAG 123 |||||| | ||| | ||||||||||| | ||||| || | | | | | ||| Sbjct 53017 AATTCGGTGTAACATTAGGAACCTTACCAGAGCTTGAAATGTTGTTTTTTAACTTTGTAG 52958 Query 124 AGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTC 183 || | ||| | | | ||| || ||| | | |||||||| |||||||| Sbjct 52957 ---TAAA--TTTTCATTACTATATTCAG-GT-ACATGAGGCGCATGGTT---GTCAGCTC 52908 Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCG 220 |||| ||||||| ||| | ||||||||||||||| || Sbjct 52907 GTGTTGTGAGATATTGCG-TAAGTCCCGCAACGAACG 52872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503929838400