Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4665 187 4e-45 seq3816 187 4e-45 seq2746 187 4e-45 seq1834 187 4e-45 seq47 86.0 1e-14 >seq4665 Length=34750 Score = 187 bits (206), Expect = 4e-45 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | ||| || || ||| || | || |||||| || Sbjct 4932 GGTCCTCTCGTACTAAAAGAAAAACTCTTC--AATGTTCTTATGTATACACCGGATATGG 4875 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 4874 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 4815 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 4814 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 4766 Score = 187 bits (206), Expect = 4e-45 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | ||| || || ||| || | || |||||| || Sbjct 29790 GGTCCTCTCGTACTAAAAGAAAAACTCTTC--AATGTTCTTATGTATACACCGGATATGG 29847 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 29848 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 29907 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 29908 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 29956 >seq3816 Length=5097 Score = 187 bits (206), Expect = 4e-45 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | ||| || || ||| || | || |||||| || Sbjct 430 GGTCCTCTCGTACTAAAAGAAAAACTCTTC--AATGTTCTTATGTATACACCGGATATGG 487 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 488 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 547 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 548 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 596 >seq2746 Length=15868 Score = 187 bits (206), Expect = 4e-45 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | ||| || || ||| || | || |||||| || Sbjct 15174 GGTCCTCTCGTACTAAAAGAAAAACTCTTC--AATGTTCTTATGTATACACCGGATATGG 15231 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 15232 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 15291 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 15292 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 15340 >seq1834 Length=313589 Score = 187 bits (206), Expect = 4e-45 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | ||| || || ||| || | || |||||| || Sbjct 121429 GGTCCTCTCGTACTAAAAGAAAAACTCTTC--AATGTTCTTATGTATACACCGGATATGG 121486 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 121487 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 121546 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 121547 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 121595 >seq47 Length=473888 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| || Sbjct 287290 AACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCTGCTTTAATGGACGAACAGATTAA 287231 Query 231 CCCTTGGGAC 240 |||||| ||| Sbjct 287230 CCCTTGAGAC 287221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780764713940