Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4665 105 2e-20 seq3816 105 2e-20 seq1834 105 2e-20 >seq4665 Length=34750 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 1292 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 1233 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 1232 CTGGGCGTAAAGCGTATGTAGGTGGTTT 1205 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 33430 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 33489 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 33490 CTGGGCGTAAAGCGTATGTAGGTGGTTT 33517 >seq3816 Length=5097 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 4067 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 4126 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 4127 CTGGGCGTAAAGCGTATGTAGGTGGTTT 4154 >seq1834 Length=313589 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 115514 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 115573 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 115574 CTGGGCGTAAAGCGTATGTAGGTGGTTT 115601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203143870720