Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq31349 248 4e-63 seq3497 201 5e-49 seq16645 134 6e-29 >seq31349 Length=8237 Score = 248 bits (274), Expect = 4e-63 Identities = 233/292 (80%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 393 AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTG 452 ||||||| | | | ||||||||| |||||||||||||||||||| | | |||||||||| Sbjct 5403 AATGGTTTTTACTGTCCCGTCTTGAAACACGGACCAAGGAGTCTACCCTATATGCGAGTG 5462 Query 453 TTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT 511 | | ||| |||| | | |||| |||||||||||| ||||| ||| || || | Sbjct 5463 TGCGAGTGGAGAAACTCATACGCGGAATGAAAGTGAA---AGGTGTGAAATCGCAAGA-T 5518 Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGA 571 ||| |||||||||| || | | | || || |||||||| ||||||| ||| | ||| Sbjct 5519 GCAACATCGACCGACCCGG----CAT--GAAGGGTTTGAGTATGAGCATATCTGGTAGGA 5572 Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 |||||||||||||||||||||||||||||||| |||| ||| |||| || ||||||| Sbjct 5573 CCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGTCAGGAGAAATCTTGATGGAGGC 5632 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 5633 TCGAAGCGGTGTTGACGTGCAAATCACTCGTCAAATTTGGGTATAGGGGCGA 5684 Score = 122 bits (134), Expect = 4e-25 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||| |||| |||| | |||||| ||| ||||| || |||| |||| Sbjct 5092 TTCAAAGAGTCAGGTTGCTTGGAACTGCAGCCTTAAGCGGGAGATATGAAACTTCCAAAG 5151 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||| ||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 5152 CTAAATATTGATGGGAGACCGATAGCGTACAAGTACTGTGAAGGAAAGATGAAAAGGACT 5211 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||||||||| |||| | |||||| ||||| | ||| ||| Sbjct 5212 TTGAAAAGAGAGTGAAAA--GATCTGAAATCGTTGAGAAGGATGCG 5255 >seq3497 Length=5709 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 4606 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTTA 4665 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 4666 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 4722 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 4723 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 4782 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 4783 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 4842 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 4843 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 4885 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||| | | | || || || Sbjct 4227 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCCGTCCAAGGC 4286 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 4287 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 4346 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | |||||||| | ||||||||| Sbjct 4347 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 4391 >seq16645 Length=1360 Score = 134 bits (148), Expect = 6e-29 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 ||||||||||||||||||||||||||||| |||| ||| |||| || |||||||||| Sbjct 1234 GAAAGATGGTGAACTATGCCTGAATAGGGCGAAGTCAGGAGAAATCTTGATGGAGGCTCG 1293 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 1294 AAGCGGTGTTGACGTGCAAATCACTCGTCAAATTTGGGTATAGGGGCGA 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079194874250