Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq13080 109 1e-21 >seq13080 Length=4844 Score = 109 bits (120), Expect = 1e-21 Identities = 174/245 (71%), Gaps = 15/245 (6%) Strand=Plus/Plus Query 100 TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCG 159 ||| |||||||||||| ||| |||| | | ||| |||||||| | | |||||||| Sbjct 2 TGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCACCCTCTCAGGTCGGCTACGGATCACAA 61 Query 160 CCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCA 219 ||||||| ||||||||| |||||||||| ||||||||| ||| |||| || || Sbjct 62 CCTTGGTAGGCCATTACCCCACCAACTAGTTAATCCGACGCGGGCCCATCCTGTACCGAT 121 Query 220 A--------GGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTC 271 | |||| ||| || ||| || ||| | | ||||||| |||| | Sbjct 122 AAATCTTTCCGCCCTAAG---CCATGC-GGCT-TCGT-GCGCATATGCGGCATTAACAGT 175 Query 272 CGTTTCCGAACGTTATCCCCCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCG 330 ||||||| | ||||| ||||| ||| ||||| || || | | |||||||||| |||| Sbjct 176 CGTTTCCAACTGTTATTCCCCAGTACAGGGCAGGTTACCCACGTGTTACTCACCCATCCG 235 Query 331 CCGCT 335 ||||| Sbjct 236 CCGCT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071597624800