Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq13080 127 5e-27 seq24030 93.3 1e-16 >seq13080 Length=4844 Score = 127 bits (140), Expect = 5e-27 Identities = 228/328 (70%), Gaps = 25/328 (8%) Strand=Plus/Plus Query 101 TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCG 160 ||| |||||||||||| ||| |||||| ||||| |||||||| | |||| ||||| Sbjct 2 TGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCACCCTCTCAGGTCGGCTACGGATCACAA 61 Query 161 CCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAG 220 ||| ||| |||||||||||| |||||||| |||||| | ||| ||||| || || Sbjct 62 CCTTGGTAGGCCATTACCCCACCAACTAGTTAATCCGACGCGGGCCCATCCTGTACCGAT 121 Query 221 A--------GGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCAC 272 | |||| ||| || | || |||| ||||||| |||| | Sbjct 122 AAATCTTTCCGCCCTAAG----CCATGCGGCTTCGTGCG--CATATGCGGCATTAACAGT 175 Query 273 CGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCG 331 |||||||| ||||| |||| | |||| ||| |||| |||||||||| |||| Sbjct 176 CGTTTCCAACTGTTATTCCCCAGTACAGGGCAGGTTACCCACGTGTTACTCACCCATCCG 235 Query 332 CCACTCGTCAGCGAAGCA--GCAAGCTGCTTCCTGTTA---CCGTTCGACTTGCATGTGT 386 || | | || ||| | || || ||||| ||| ||| ||||||||||||||| Sbjct 236 CCGC---TAAGATAAGAATCGCTAG--GCTTCAACTTATCTCCGCTCGACTTGCATGTGT 290 Query 387 TAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||| |||||||||||||| ||||| Sbjct 291 TAGGCACGCCGCCAGCGTTCATCCTGAG 318 >seq24030 Length=9316 Score = 93.3 bits (102), Expect = 1e-16 Identities = 106/143 (74%), Gaps = 17/143 (12%) Strand=Plus/Plus Query 272 CCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCG 331 ||||||||||| ||| | ||||||| ||||| ||| | | ||||||||||||||| Sbjct 1 CCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCG 60 Query 332 CCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGC 391 ||||| ||| || || |||| ||||||||||||||||||||| || Sbjct 61 CCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGCATGTGTTAAGC 103 Query 392 CTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||| ||||| Sbjct 104 ATGCCGCCAGCGTTCATCCTGAG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221941172160