Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq13080 167 7e-39 >seq13080 Length=4844 Score = 167 bits (184), Expect = 7e-39 Identities = 183/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||| ||||||||||| ||||||||||||||||||||| | |||||| | Sbjct 240 AGCGGCGGATGGGTGAGTAACACGTGGGTAACCTGCCCTGTACTGGGGAATAACAGTTGG 181 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATC-GCATGGTAGAAGTATCAAAGCTCC 141 ||| | || |||| | ||| | | | | |||||| | | |||| | Sbjct 180 AAACGACTGTTAATGCCGCATA-TGCGCACGAAGCCGCATGGCTTAGGGCGGAAAGATTT 122 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 ||||||||||| | |||||||| ||||| ||||||||| ||||| ||| |||||||| Sbjct 121 ATCGGTACAGGATGGGCCCGCGTCGGATTAACTAGTTGGTGGGGTAATGGCCTACCAAGG 62 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 |||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||| Sbjct 61 TTGTGATCCGTAGCCGACCTGAGAGGGTGACCGGCCACATTGGGACTGAGACACGGCCCA 2 Query 262 A 262 | Sbjct 1 A 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497037875840