Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3497 320 3e-85 seq31349 197 3e-48 >seq3497 Length=5709 Score = 320 bits (354), Expect = 3e-85 Identities = 227/259 (88%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 2950 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 3009 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 3010 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 3069 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 3070 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 3129 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 3130 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 3189 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 3190 TACGTCCCTGCCCTTTGTA 3208 >seq31349 Length=8237 Score = 197 bits (218), Expect = 3e-48 Identities = 202/258 (78%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||| | ||| |||||||||||||||||||||||||| ||| Sbjct 4077 CTTCTTAGAGGGACTATGTAATACAAATACATGGAAGTTTGAGGCAATAACAGGTCAGTG 4136 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| |||| |||||| ||||||| |||||||||| | |||| ||| | | | Sbjct 4137 ATGCCCTTATATGTCCTGGGCTGCACGCGTGCTACACTGATGCATACAACAAGTGCCTAA 4196 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | | | ||| ||| ||||| | || | ||||| |||||||||| | ||| Sbjct 4197 CCA--GAC--ATGGTATGGC-AATCTCG--AATATGCATCGTGATGGGGATAGATCTTTG 4249 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | |||| |||||||||| ||||||||| || ||||||| | || |||||| Sbjct 4250 CAATTATAGATCTTGAACGAGGAATTCCTAGTAAGTGCAAGTCATCATCTTGCATTGATT 4309 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 4310 ATGTCCCTGCCCTTTGTA 4327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946844468480