Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq34999 706 0.0 seq31349 571 2e-160 seq34403 306 1e-80 >seq34999 Length=2877 Score = 706 bits (782), Expect = 0.0 Identities = 480/535 (90%), Gaps = 8/535 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1584 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1643 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1644 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1703 Query 127 GGCCCGCGAAG----GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| || | |||| |||| || || || | || | ||||| | Sbjct 1704 GGCCCGGTGAGACCGGGCCTTGGAGCCAAAAGGAGG--GGACTTGCCCCGCTTCCGACCC 1761 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCC 240 | || ||||||||| |||| ||| |||||||||||||||||||||| | || |||||| Sbjct 1762 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGTAAAGGCTCC 1821 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1822 CACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 1881 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1882 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 1941 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1942 TAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 2001 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2002 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 2061 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2062 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 2116 >seq31349 Length=8237 Score = 571 bits (632), Expect = 2e-160 Identities = 445/527 (84%), Gaps = 13/527 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||| ||||||||||||||| Sbjct 7390 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTCACCTTTGGACACCTGCGTTATC 7331 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || |||| Sbjct 7330 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCGCCTAGATC 7271 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 | | |||||| ||| |||| || |||| | ||| || | || Sbjct 7270 AGT-----ATTTACCTTAGTTCCA--AAAT--TCCAAGAAGGA-ATTTCTAATTAACGGA 7221 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||| | ||| ||||||||||||||| || || |||||||||| Sbjct 7220 ATAAGTAAGACGACGTCTCAAGTAGTGGTATTTCAC---CGTTGATTTCTCTCCCACTTA 7164 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | ||||| ||| |||| |||||||||| | ||||||||||||||||||||||||||| Sbjct 7163 TCCTACATCTCGAGAGTCGTTTCACAAAGCCAAACTAGAGTCAAGCTCAACAGGGTCTTC 7104 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 7103 TTTCCCCGCTGATTCTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATA 7044 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7043 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 6984 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 6983 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGTTTGAATTACT 6924 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 6923 TCACCTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 6877 >seq34403 Length=2983 Score = 306 bits (338), Expect = 1e-80 Identities = 392/529 (74%), Gaps = 21/529 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||||||| ||| ||||| | |||| ||| | ||||||||| Sbjct 710 CTTTTTGTCTACGAGAGATTTCTGTACTCTTTGAGTTCTCCTTTGGAAATCTGCGTTATC 769 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| || |||| |||| |||||||||||||||||||| ||||| | || || | Sbjct 770 ATTTAATAGTAGTGCTGCCC-AGCCAAACTCCCCACCTGACTATGTCTTTCGCCTAGAGC 828 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 | | ||||| | ||||| | || || | ||| || | || Sbjct 829 AGT-----ATTTACCTTT--GTTTAAAAATTC-CTAAGAGGA--ATTTCTAATTAAGGGA 878 Query 187 TTAAGTaaaa--aaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 ||| ||| | ||| ||| ||||||| |||||| | || |||| | | Sbjct 879 ATAATTAAGACGAAATCTCAAG--TAGTGGTGTTTCAC---CATTGATTACTCTCCTATT 933 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||| ||| ||||| |||||||||||| ||||||||||| |||||| | ||| Sbjct 934 TATCCTACATCTCGAAAGTCGTTTCACAAAGTCAAACTAGAGTCAAT-TCAACAAGTTCT 992 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||| |||||| || ||||||| |||| ||||||| ||||||||||| |||| Sbjct 993 TCTTTCCCCTCTGATTTTTCCGGGCCCGTTTCCTTTGCTGTGGGTTCGCTAGATAATAGA 1052 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 || ||||||| |||||||||||||||||||||| | |||||||||| | | | |||| | Sbjct 1053 TAAGGACAGTCAGAATCTCGTTAATCCATTCATGTGGGTCACTAATTTG-TTAAGAGGGA 1111 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||| |||||||| ||| |||||||||| || |||||||| | | ||| ||||||| Sbjct 1112 TTTAGCTACCTTCTTCGAGCCATAGTTACTTCCCCCGTTTACGCACTCTTTTTTGAATTA 1171 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| || ||||||||| |||| || |||||||||||| ||||||| Sbjct 1172 CTTCACCTTAACATTCAGAACACTTGG-TGAAATCACATTGTGTCAACA 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634586227680