Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq31349 125 1e-26 seq34999 107 3e-21 seq11897 95.1 2e-17 >seq31349 Length=8237 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| | ||| | |||| ||| ||| Sbjct 7714 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAAATACGGTTAGCTGATCAGCTAGT 7771 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 7772 GCCGTGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 7829 >seq34999 Length=2877 Score = 107 bits (118), Expect = 3e-21 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1261 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1204 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 1203 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1144 Query 121 G 121 | Sbjct 1143 G 1143 >seq11897 Length=1589 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| | ||| | |||| ||| ||| Sbjct 27 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAAATACGGTTAGCTGATCAGCTAGT 84 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 |||| |||||||||||||| ||||||||| ||||||||||| || Sbjct 85 GCCGTGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCAAA 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818902122240