Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3497 589 7e-166 seq31349 358 2e-96 seq15888 179 1e-42 >seq3497 Length=5709 Score = 589 bits (652), Expect = 7e-166 Identities = 443/513 (86%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 2091 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 2032 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2031 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1972 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1971 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1912 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1911 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1852 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| | ||| | | | || | Sbjct 1851 CGAGGGCCTTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 1794 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 1793 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATT 1734 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 1733 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 1675 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | |||| || |||||| |||||||||||| Sbjct 1674 TTTAATGAGCCATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACATGCATGGCT 1615 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1614 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1582 >seq31349 Length=8237 Score = 358 bits (396), Expect = 2e-96 Identities = 361/464 (78%), Gaps = 43/464 (9%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||| | ||||||| ||||||| | ||| |||||||||||||| ||||||||||||||||| Sbjct 3264 TATATCTTGTCACCACCTCCCTGAGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 3205 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||| Sbjct 3204 GTAGATGTAGTAGCCGTTTCTCAGGCTCCTTCTCCAGAATCGAACCCTAATTCCCTGTTA 3145 Query 163 CCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAG-TTGATAGGGCAGAAATT 220 |||| ||| | ||||||||| ||| || |||||| |||||| |||||||||||||| | Sbjct 3144 CCCG-TGAGAGCCATGGTAGTCCAATACACTACCAACGAAAGCATGATAGGGCAGAAACT 3086 Query 221 TGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG 280 || |||| ||| | ||| | ||| |||| | |||||||||||| ||||| Sbjct 3085 TGGATGATTTATCTC---ATCATAG--ATGAGATTTGCGAAGTTATTATGATTCACC--- 3034 Query 281 GAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT 340 | ||| ||||||||||||||| |||| || | | Sbjct 3033 -TTATCGGAA--------------TATCTAATAAATACA-ACCTTGCG--GCC------- 2999 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 |||||||||||||||||||| || | || ||||||||| || | ||||||||| Sbjct 2998 TTAGCATGTATTAGCTCTAGTTTTTCTACAGTTATCCATTTAAT------GTATCAAATA 2945 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||| | |||||||||||||||||||| ||| | ||| || ||||||||||| Sbjct 2944 AACAATAACTGTTGTAATGAGCCATTCGCAGTTTTACTATGTAG-TTATTTATACTTAGA 2886 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 2885 CATGCATGGCTTAGTCTTTGAGACAAGCATATGATTACTGGCAG 2842 >seq15888 Length=1388 Score = 179 bits (198), Expect = 1e-42 Identities = 104/107 (97%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 60 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 61 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509833071360