Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq8586 100 3e-19 seq77926 78.8 1e-12 >seq8586 Length=320 Score = 100 bits (110), Expect = 3e-19 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| ||||||||||| ||||| || | || Sbjct 151 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTGGCTGTCAGTGCAGTTCCAC 210 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||| || ||||| | | | || || | || ||| || || ||||| || Sbjct 211 CGCGTTATATCAACTTAGCATATACTTTGGGACCTTAGCTGGTGATCTGGGTTCTTTCCC 270 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGC 160 |||||| || |||||||| |||||||||||||||| |||| Sbjct 271 TCTCGGACATGGACCTTAGCACCCATGCCCTCACT-GCGC 309 >seq77926 Length=1131 Score = 78.8 bits (86), Expect = 1e-12 Identities = 104/142 (73%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 52 CAATCAGACTTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGA 111 ||||| || |||| ||| ||||| | |||| || | || | || ||| || Sbjct 1128 CAATCGCACAACGTTTGATCAACTTAGTGTATATTTTGGGACCTTAGCCGATGGTCTGGG 1069 Query 112 TTCTTCTCCTCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGA 171 ||||| |||||||| || |||||||| |||||||||||||||| || | | || || | Sbjct 1068 TTCTTTCCCTCTCGGACATGGACCTTAGCACCCATGCCCTCACT-GCTCAGTATATCTTA 1010 Query 172 TGCGCATTCGGAGTTTGGCAGG 193 | |||||||||||||| |||| Sbjct 1009 T-AGCATTCGGAGTTTGTCAGG 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537031536384