Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq97179 80.6 5e-13 seq44820 75.2 2e-11 seq25395 75.2 2e-11 >seq97179 Length=480 Score = 80.6 bits (88), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164 |||||||||| ||| |||| |||||| ||| |||||| ||| || ||||| | Sbjct 273 GGATTTGCCTAAAGAAC-CAAC--CTACACGCTTGAACCGGGACATCCAACACCCGGCTG 329 Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGGAATACTAACC-GTT 223 | | || || ||||||||| || | | | | |||| |||||| ||||| ||| Sbjct 330 ACCTAAC-CTTCTCCGTCCCCACATCGCATTATATTAAAGTACAGGAATATTAACCTGTT 388 Query 224 TCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTA 283 || |||||| ||| || || ||||| | |||||| |||||| |||||||| Sbjct 389 TC--CCATCGACTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGTTCCGATTA 446 Query 284 GCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314 || || ||||||||||||| ||| ||||| Sbjct 447 ACGTCGAACAGGAAACCTTAGACTTACGGCG 477 >seq44820 Length=222 Score = 75.2 bits (82), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 209 GGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACT 267 |||||| ||||| | ||| |||||| ||| ||| || ||||| | |||||| Sbjct 183 GGAATATTAACCCGCTTC--CCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACT 126 Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 |||||| |||||||||| || ||||||||||| |||| ||||| || ||||| || Sbjct 125 CACCCTGTCCCGATTAGCGTTGGACAGGAAACCTTGATCTTCCGGCGGGGAGGTTTTTCA 66 Query 328 CCCCC 332 ||||| Sbjct 65 CCCCC 61 >seq25395 Length=263 Score = 75.2 bits (82), Expect = 2e-11 Identities = 88/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| ||||||| |||||| || | |||||| ||| || || ||||| | | Sbjct 147 AGTATCGGAATATTAACCGATT-TCCCATCGACTACGCTTCTCAGCCTCGCCTTAGGGGC 205 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGG 320 ||||| |||||| ||||||| || || |||||| |||| ||||||||||| ||||| Sbjct 206 CGACTCACCCTGCGCCGATTAACGTTGCGCAGGAACCCTTGGTCTTTCGGCGTGGGGG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 958952140800