Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq77926 304 3e-80 seq104094 280 3e-73 seq97778 230 5e-58 seq69987 217 3e-54 seq72356 143 5e-32 seq75365 118 2e-24 seq15380 113 9e-23 seq40912 93.3 8e-17 >seq77926 Length=1131 Score = 304 bits (336), Expect = 3e-80 Identities = 264/325 (81%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 13 GGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGT 72 ||| |||||| ||| |||||| ||| | | ||||||||||||| |||| | | | Sbjct 579 GGGAGTGAAAAAGATCCTGAAACCGTGTGTCTACAAGCGGTCGAAGCCTACGG-----GC 633 Query 73 GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGC 132 |||||||||||||||||||||||| ||||||||||| || ||| || |||||||| Sbjct 634 GACGGCGTGCCTTTTGCATAATGATCCTACGAGTTACTCCTCATTGGCAAGGTTAAGAAT 693 Query 133 TTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGCT 191 || ||| || |||||||| ||||||||| ||||| |||||||| ||| |||| | | Sbjct 694 TTAAGGTTCGA-AGCCGAAGCGAAAGCGAGTCTTAATAGGGCGACATAGTCAGTGGGGGT 752 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 |||||||||||||||||||||||||| | ||||||||||| | ||||| | ||||| Sbjct 753 AGACGCGAAACCTTGTGATCTACCCATGGCCAGGTTGAAGTTCCAGTAACATGGAATGGA 812 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 ||||||||| | || |||||||||||| ||| ||||| | |||||||||||||||||| Sbjct 813 GGACCGAACTGATATACGTTGAAAAGTGTTCAGATGAGCTGTGGGTAGGGGTGAAAGGCC 872 Query 312 AATCAAACTGGGAAATAGCTCGTAC 336 ||||||||| ||||||||||||||| Sbjct 873 AATCAAACTAGGAAATAGCTCGTAC 897 >seq104094 Length=405 Score = 280 bits (310), Expect = 3e-73 Identities = 244/298 (82%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 40 CGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCC 99 ||| |||||||||||||||| | || | ||||||||||||||||||||||||||| Sbjct 6 CGCTTACAAGCGGTCGGAGCGG---GAAT----GACGGCGTGCCTTTTGCATAATGAGCC 58 Query 100 TACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGC 159 ||||||||| | | || ||| ||||||||| ||||||| ||| ||||| || |||||| Sbjct 59 TACGAGTTACTTTT-ACTAGCAAGGTTAAGGACTTCAGGTCCGG-AGCCGTAGCGAAAGC 116 Query 160 GAGCCTTAACAGGGCGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCAC 218 ||| || || |||||| | ||| || | ||||||||||||| ||||||||||||| Sbjct 117 GAGTCTGAATAGGGCGCCATAGTCAGTAGTAGTAGACGCGAAACCGTGTGATCTACCCAT 176 Query 219 GAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGT 278 | ||||||||||| | |||||| | |||||||||||||| || |||||||||||| Sbjct 177 GGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCCGTTGACGTTGAAAAGT 236 Query 279 TTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 || ||||||| | ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 237 CTTGGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGTAC 294 >seq97778 Length=468 Score = 230 bits (254), Expect = 5e-58 Identities = 242/314 (77%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||||||||||||| |||||| ||| |||||||||||||||||||| | | Sbjct 160 AGGGGGGTGAAATAGTACCTGAAACCGTATGCCTACAAGCGGTCGGAGCCCTACGG---G 216 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||||| |||||||||||||||| |||||||||| || | ||| |||||| Sbjct 217 GTGACGGCGTGCTTTTTGCATAATGAGCCCGCGAGTTAGTC-TCTGTGGTGAGCTTAAGG 275 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 || || ||| || || || ||||||||| || || |||||| | | | || || Sbjct 276 CCTAACGGGCCGG-AGGCGGAGCGAAAGCGAGTCTGAATAGGGCGTTTAATCGCAGGGGC 334 Query 191 TAGACGCGAAACCT-TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| ||||||||||||| | |||| ||||| | ||||| | || || Sbjct 335 TAGACACGAAACCCGTGTGATCTACCCATGGTCAGGGTGAAGGTGGGGTAAAACCTGCTG 394 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||||||| || |||||||||||||| | |||||| | ||| |||||| |||| Sbjct 395 GAGGCCCGAACCCGTCAACGTTGAAAAGTTGTGGGATGAACTGTGGGGAGGGGTCAAAGT 454 Query 310 CCAATCAAACTGGG 323 |||||||||| ||| Sbjct 455 CCAATCAAACCGGG 468 >seq69987 Length=1764 Score = 217 bits (240), Expect = 3e-54 Identities = 249/331 (75%), Gaps = 8/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| ||||||||| |||||| | | |||||||| | ||||||||| Sbjct 1398 CCCGACAAGGGGAGTGAAATAGTACCTGAAACTGGATGCCTACAAACTGTCGGAGCCC-- 1455 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||||||||| ||||||| |||||| | | |||| ||| | || || ||| || Sbjct 1456 -GCAAGGGTGACGGCGTACCTTTTGTATAATGGGTCAACGACTTAAT-GTAACGAGCAAG 1513 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| | |||| Sbjct 1514 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGCCAAGTTC 1569 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || || ||||| ||||||| |||||||| ||| ||||||||||||| |||||| | Sbjct 1570 GTTGCATTAGACCCGAAACCAAGTGATCTATCCATGAGCAGGTTGAAGGTTGGGTAACAC 1629 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || ||||||||||| || |||||| || || | |||||||| | || ||||||| Sbjct 1630 CAACTGAAGGACCGAACCCATAGACGTTGCAATGTCTCGGGATGACTTGTGGATAGGGGT 1689 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 1690 GAAAGGCCAATCAAACTTGGAAATAGCTGGT 1720 >seq72356 Length=1541 Score = 143 bits (158), Expect = 5e-32 Identities = 234/332 (70%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| ||||||||| |||||| ||| |||||||| | || |||||| Sbjct 335 CCCGACAAGGGGAGTGAAATAGTACCTGAAACCGAATGCCTACAAACAGTGGGAGCC--- 279 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 ||| |||||| ||| ||||||| |||||| | | ||| ||| | | | ||| || Sbjct 278 TGAAATGGTGACCACGTACCTTTTGTATAATGGGTCAGCGACTTAATT-TATCGAGCAAG 220 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTT 182 |||| || ||| || || || |||| |||| ||||| |||||| | |||| Sbjct 219 CTTAAACCGTT-AGGTG---TATGCGCAGGGAAACCGAGTCTTAATAGGGCGTCTTAGTT 164 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 || | ||||| ||||||| |||||| ||| ||||||| ||||| || ||||| Sbjct 163 CGTTGGATTAGACCCGAAACCAGTCGATCTAGCCATGAGCAGGCTGAAGGTGCAGTAACA 104 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 | |||||| ||||||| |||||||| |||||||| | || |||||| Sbjct 103 TGCACTGGAGGGCCGAACCCACGTCTGTTGAAAAAGCCGGGGATGACTTGTGGCTAGGGG 44 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||| |||||||||| || Sbjct 43 TGAAAGGCCAATCAAGGCTGGAAATAGCTGGT 12 >seq75365 Length=1304 Score = 118 bits (130), Expect = 2e-24 Identities = 188/266 (71%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||||||| |||||| | | ||| ||| | ||| || ||||||| Sbjct 26 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTAATTTTCAGTGGCAAGGTTAAC 85 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || ||||| || |||| |||| ||||| |||||||| ||| | ||| Sbjct 86 CGAATAGGGG-----AGCCGTAGGGAAACCGAGTCTTAATAGGGCGAC-AGTCGCTGGAA 139 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG-TCGCGGTAACGCGTGAT 248 ||||| ||||||| | |||||| ||| | |||||||||| ||| ||||| | | Sbjct 140 TTAGACCCGAAACCGGGCGATCTATCCATGGCCAGGTTGAAGGTCG-GGTAATACCGACT 198 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||||||||||| | |||||||| | |||||| | || |||| ||||||| Sbjct 199 GGAGGACCGAACCAACTTATGTTGAAAAATGAGTGGATGAGCTGTGGATAGGAGTGAAAG 258 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || || ||| | ||| |||||| || Sbjct 259 GCTAAACAAGCCCGGAGATAGCTGGT 284 >seq15380 Length=293 Score = 113 bits (124), Expect = 9e-23 Identities = 203/293 (69%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 41 GCCTACAAGCGGTCGGAGCCGAGTGA--TTCGGTGACGGCGTGCCTTTTGCATAATGAGC 98 || ||||||| || ||||| | | || ||||| |||| ||||||| |||||| | Sbjct 287 GCATACAAGCAGTAGGAGCATAATTTAGTTATGTGACTGCGTACCTTTTGTATAATGGGT 228 Query 99 CTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAG 158 | ||||||| | | | ||| ||| ||| | | ||| | ||| || ||||| Sbjct 227 CAGCGAGTTACTTTT-AGTAGCAAGGATAACTGAATAAGGG-----ATCCGTAGCGAAAG 174 Query 159 CGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTT-GTGATCTACCCA 217 |||| ||||| |||||| ||||| | | ||||| ||||||| | |||||| ||| Sbjct 173 CGAGTCTTAATAGGGCGTATAGTTGCTAGGAGTAGACCCGAAACCGGCGCGATCTATCCA 114 Query 218 CGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAG 277 || |||||||||| ||||| | |||||||||||||| || |||| ||| Sbjct 113 TGACCAGGTTGAAGGTTAGGTAATACTAACTGGAGGACCGAACCCACTAATGTTGCAAAA 54 Query 278 TTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGC 330 || |||||| | | || | || ||||||||| |||||| | ||| ||||| Sbjct 53 TTACGGGATGAGTTGTGGATCGGAGTGAAAGGCTAATCAAGCACGGAGATAGC 1 >seq40912 Length=229 Score = 93.3 bits (102), Expect = 8e-17 Identities = 158/222 (71%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| || |||||| ||| || ||||| | || |||| | | | | Sbjct 227 AGGGGAGTGAAAGAGTTCCTGAAACCGGATGCTTACAAACAGTTGGAGG-GCGCAAGCC- 170 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||| ||||||| |||||| | | ||| ||| || | || ||| || |||| Sbjct 169 -TGACAGCGTACCTTTTGTATAATGGGTCAGCGACTTAATC-TGACGAGCAAGCTTAAAC 112 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189 || ||| ||| || || ||||||||| ||||| |||||| | |||| || | Sbjct 111 CGTT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTTAGTTCGTTGGA 56 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG 231 ||||| ||||||| |||||||| ||| | ||||||||||| Sbjct 55 TTAGACCCGAAACCAAGTGATCTATCCATGGGCAGGTTGAAG 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971738169344