Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq86356 176 7e-42 >seq86356 Length=715 Score = 176 bits (194), Expect = 7e-42 Identities = 193/251 (77%), Gaps = 23/251 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || |||||||| |||||||||||||||| | Sbjct 260 GTACAAAGGGCAGGGACGTAATCAACGC-AGGTTGATGACCTGCGCTTACTAGGAATT-C 317 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT--GAAATTTCAAAGAT 118 | | || |||| | | |||| ||| ||||||||| || |||||| | | ||| ||||| Sbjct 318 CACCTTCAAGATCCATAATTTCAACGATCTATCCGCAGCACGATACGTATTTTAGAAGAT 377 Query 119 T-ACCCGGACCTGT-------CGGCCAAGGTG---------ATAGAC-TCGTTGAATACA 160 | | | | || | | || ||| || ||| || |||||| | | Sbjct 378 TTAGCTGTGTCTATTTCGGAGCAGCAAAGATGCATAAATGCATATACCTCGTTGTACGTA 437 Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 438 TCAGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTC 497 Query 221 AAACTTCCGTG 231 ||||||| || Sbjct 498 -AACTTCCTTG 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751204827680