Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq75275 179 2e-42 seq8388 170 8e-40 seq85521 140 1e-30 >seq75275 Length=1312 Score = 179 bits (198), Expect = 2e-42 Identities = 213/281 (76%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG---TCAAAC 466 ||||||| |||||| |||||||||||||||| |||||| | | | |||| | ||| Sbjct 522 CGTCTTGAAACACGAACCAAGGAGTCTAACAGACATGCGATTATGTTGGTGCTTTGAAAA 463 Query 467 CCGTGC--GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 || | | | | ||||||||| | ||| || || | || || |||| ||||| || Sbjct 462 CCATACATGAGCAATGAAAGTAAGCGG---TGCCAATC-GTAAGA-TGCAGCATCGGCCA 408 Query 525 ATCCTGATG-TCTTCGGATGGATT-TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | |||| ||| || | | || | ||||||| ||||| |||||||||||||| Sbjct 407 GTTGTGATCCTCTGGAGAAGCGTACTGGCTGTGAGCATATCTGTTAGGACCCGAAAGATG 348 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||| || ||| |||||||||||||| ||||||||| ||||| || || |||||| Sbjct 347 GTGAACTACGCTTGAGTAGGGTGAAGCCAGGGGAAACTCTTGTGGAAGCCCGAAGCGGTA 288 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| ||| || ||||||||| Sbjct 287 CTGACGTGCAAATCGTTCGTCAAACTTGAGTGTAGGGGCGA 247 Score = 116 bits (128), Expect = 2e-23 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA 96 || ||||||||||||| |||| ||||||||||| ||||||||| | |||| |||| |||| Sbjct 891 GAAGAGTCGAGTTGTTCGGGACTGCAGCTCTAAGTGGGAGGTAGACTTCTCCTAAGGCTA 832 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 |||| |||||||||||||| ||||||| |||| |||||||||||| Sbjct 831 AATAACTATGAGAGACCGATAGCGAACAAGTAATGTGAATGAAAGATGAAAA 780 >seq8388 Length=321 Score = 170 bits (188), Expect = 8e-40 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 |||| ||||||| |||||| |||| ||| || ||||| | || ||| ||||| | | || Sbjct 294 AAGCGCCTTCGAAGAGTCGGGTTGCTTGAGATCGCAGCCCAAAGTGGAAGGTAGACTCCT 235 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || ||||||||||||| ||||||| |||| |||||||||| Sbjct 234 TCTAAAGCTAAATATTTGCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 175 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||| || || | ||||||| ||| || |||||||| ||| ||||||||||| ||| Sbjct 174 AAGCCCTCTGAAGAGAGAGTGAAACAGTACGTGAAACCGTTAAAAGGGAAGCGATTG 118 >seq85521 Length=750 Score = 140 bits (154), Expect = 1e-30 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||| ||||||||||| || || | ||||||||||| |||||||||||||| ||| Sbjct 660 GATCTGAGTAAGAGCGCAGGTGAGGCGACCCGAAAGAGAGTGAACTATGCCTGGGCAGGA 601 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| |||||||||||||| |||||| ||| | ||||||| |||||||||||||| | Sbjct 600 TGAAGTCAGAGGAAACTCTGATGGAGGTCCGCTGTGGTTCTGACGTGCAAATCGATCATT 541 Query 664 AAATTTGGGTATAGGGGCGA 683 | | ||||||||||||||| Sbjct 540 AGACCTGGGTATAGGGGCGA 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077658689600