Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq104604 131 2e-28 seq97179 127 2e-27 seq25395 75.2 1e-11 >seq104604 Length=400 Score = 131 bits (144), Expect = 2e-28 Identities = 143/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||| Sbjct 208 TTACCTGAAGCTTAGAAGATTTTCTTGGAAGCATGGCATCAATCACTCAGTCC---AAAA 152 Query 61 GATAACT-CGTCATCAGCTCCCGGCCTTAGAAT--CCCGGATTTACCTAAGATTCCAGCC 117 || ||| || ||||| || | | | | | ||||||||||||||||| | || Sbjct 151 GAGGACTTCGCCATCACGTCTCAGGATAATGTTTTCCCGGATTTACCTAAGAAAACTCCC 92 Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177 ||| |||| | |||||||||||||| ||| ||||||| ||||||| ||||||| Sbjct 91 TACGCGCTTAGATCGGGACAACCAACGCCCGTCTGATCTAGCCTACTCCGTCTCTCCATC 32 Query 178 GCATTAA 184 ||| ||| Sbjct 31 GCAGTAA 25 >seq97179 Length=480 Score = 127 bits (140), Expect = 2e-27 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || ||||||||||| ||||||||||||||||||| ||||| |||||| || || || Sbjct 181 TAACTGAAGCTTAGTGGCTTTTCTTGGAAGCATGGTATCAATCACTTC---ATGTACAAA 237 Query 62 ATA-ACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120 || |||||| |||| || || |||| |||||||| ||||| ||| ||||| Sbjct 238 GTACACTCGTTATCACGTCTCGATTTTAGCTCTCCGGATTTGCCTAAAGAACCAACCTAC 297 Query 121 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 ||| ||| ||||| ||||| || |||| |||| ||||||||||||| ||||||| Sbjct 298 ACGCTTGAACCGGGACATCCAACACCCGGCTGACCTAACCTTCTCCGTCCCCACATCGCA 357 Query 181 TTA 183 ||| Sbjct 358 TTA 360 >seq25395 Length=263 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93 CCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTG 152 ||||||||| |||||| | |||||| ||||| | |||| ||||||||| | Sbjct 50 CCCGGATTTGCCTAAGGGATCTGCCTACTACCTTTCCCCGGGACTACCAACGCCCGGTAT 109 Query 153 GCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 |||||||||||||||||| |||||||| ||| || |||| Sbjct 110 ACCTAGCCTTCTCCGTCCCCCCATCGCAATAATGAGCAGTA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517851838656