Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq96356 178 1e-42 seq77926 165 8e-39 seq94389 114 1e-23 seq78207 104 2e-20 seq76209 102 8e-20 seq69987 96.9 3e-18 seq85905 86.0 6e-15 seq24439 82.4 7e-14 seq16164 82.4 7e-14 >seq96356 Length=490 Score = 178 bits (196), Expect = 1e-42 Identities = 142/168 (85%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 13 ATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTG 72 |||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||| | Sbjct 229 ATGCCTAGGCTCTCAGAGGCGATGAAGGACGCGATAAGCTGCGAAAAGCTGCGGGGATCG 170 Query 73 GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATAT 132 |||||||||| ||||||| |||||||||||||||||||||| || ||| ||| || | Sbjct 169 GCACATACGATATGATCCGCAGATATCCGAATGGGGCAACCCAGCAT-TTGAAGACATGT 111 Query 133 CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| ||| |||| ||| |||||||||||||||||||||| Sbjct 110 TAT-CCGCAAGG----AGGCAAACCCGGGGAACTGAAACATCTAAGTA 68 >seq77926 Length=1131 Score = 165 bits (182), Expect = 8e-39 Identities = 146/180 (81%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 76 GGCACACGGGGAATGCCTAGGCTCTCAGAGGCGAAGAAAGACGTGATAAGCTGCGATAAG 135 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 ||||| ||| |||| |||| |||||| ||||||| || |||||||| |||||| ||| Sbjct 136 CTACGAGGAGGGGCAAATACCTATTGATTCGTAGATTTCTGAATGGGGAAACCCGGTATG 195 Query 121 TTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| ||| ||| || || | | || ||| |||| | ||||||||||||||||||| Sbjct 196 TTGAAGACATACCACCAC-TTCG--GTGGGGCAAACGCGCTGAACTGAAACATCTAAGTA 252 >seq94389 Length=523 Score = 114 bits (126), Expect = 1e-23 Identities = 142/187 (76%), Gaps = 13/187 (7%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || ||||||| |||||||||| || |||||||||||| || Sbjct 294 ACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTG-TAGCCTGCGAAAAGCTTCG 236 Query 66 GGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG----CAACCCGATATA 120 |||| | |||| | | |||||||| |||| ||||||||||| | |||| || || Sbjct 235 GGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCCGAATGGGGAAACCCACCCAATGTA 176 Query 121 --TTGGAGATATATCA--TAACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACAT 173 |||| || || || | |||| || ||||||||| ||||||||||||||| Sbjct 175 AGTTGGGTATCCTGCACTGAATTCATAGGTGTAGGAGGCGAACGAGGGGAACTGAAACAT 116 Query 174 CTAAGTA 180 ||||||| Sbjct 115 CTAAGTA 109 >seq78207 Length=1114 Score = 104 bits (114), Expect = 2e-20 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| |||||||||||||| ||||||||||| Sbjct 384 GCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAATCTGCGAAAAGC 325 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| || | ||| | |||||||| |||| ||||||||||| ||||| Sbjct 324 TTCGGGGAGCTGATAAATAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCC 271 >seq76209 Length=1242 Score = 102 bits (112), Expect = 8e-20 Identities = 139/189 (74%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||||||||| ||| ||||| |||| Sbjct 867 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTTGTAACATGCGATAAGC 926 Query 62 TACGGGGATTG-GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC----GA 116 |||||| || | | | | |||||||| ||| ||||||||||| ||||| | Sbjct 927 CTCGGGGAGTGTGTAAACTCACTTTGATCCGAGGATTTCCGAATGGGGAAACCCACCTAA 986 Query 117 TATATTGGAGAT--ATATCATAACGC-TAGG--CGTTAGGCGAACGTGGGGAACTGAAAC 171 | |||| | || || | || | |||| | ||||||||| ||||||||||||| Sbjct 987 TTTATTAGGTATCATTAACTGAATACATAGGTTAATGAGGCGAACGAGGGGAACTGAAAC 1046 Query 172 ATCTAAGTA 180 ||||||||| Sbjct 1047 ATCTAAGTA 1055 >seq69987 Length=1764 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 9 GTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGG 68 |||||||||| ||| | || ||| ||||||||||||| |||||||||||||| |||| Sbjct 872 GTGGATGCCTTGGCATGCACAGCCGATGAAGGACGTGATACGCTGCGAAAAGCTATGGGG 931 Query 69 ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | || ||||| |||||| ||||| ||||||||||| ||||| Sbjct 932 AGCTGCGAATACGCTATGATCCATAGATGTCCGAATGGGGAAACCC 977 >seq85905 Length=734 Score = 86.0 bits (94), Expect = 6e-15 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | ||||||| ||||||||||||| ||||| |||| | ||| Sbjct 628 GGTGGATGCCTTGGCAGTAAGAGGCGATGAAGGACGTGATACTCTGCGTTAAGCCATGGG 687 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || | ||| | ||||||| | ||| ||||||||||||||||| Sbjct 688 GAGCTGAGAATAAGCTTTGATCCATGGATTTCCGAATGGGGCAACCC 734 >seq24439 Length=266 Score = 82.4 bits (90), Expect = 7e-14 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| ||| || ||||||| |||||||||| ||| |||||| ||||| ||| Sbjct 161 GGCGGATGCCTTGGCATTCAGAGGCGATGAAGGACGTGTTAATCTGCGATAAGCTTCGGT 102 Query 68 GAT-TGGCACAT-ACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||| | || || || |||||| |||| ||||||||||| ||||| Sbjct 101 TAGGTGGTAAATGACCTAT-GATCCGGAGATTTCCGAATGGGGGAACCC 54 >seq16164 Length=287 Score = 82.4 bits (90), Expect = 7e-14 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| |||||||||| || ||||||| ||| | ||| Sbjct 163 GGTGGATGCCTTGGCGCTAAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGTCATGGG 222 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | | ||||||||| || ||||||||||| ||||| Sbjct 223 GAGCTGCGAACAAGCTTTGATCCGTGAATTTCCGAATGGGG-AACCC 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476295826912