Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq94135 271 2e-70 seq3379 262 1e-67 seq104849 208 2e-51 seq59121 152 1e-34 seq7305 152 1e-34 seq57215 150 5e-34 >seq94135 Length=527 Score = 271 bits (300), Expect = 2e-70 Identities = 260/332 (78%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 407 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 348 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||| ||||| || ||||||||| | |||| ||| |||||||| | Sbjct 347 TCCGGAATCATTGGGTTTAAAGGGTCCGCAGGCGGACTTATAAGTCAGTGGTGAAATCTC 288 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| | || ||| ||| |||| | | || || | | || | ||| | Sbjct 287 ACAGCTTAACTGTGAAACTGCCATTGATACTGTAAGTCTTGAATTCGGTCGAAGTGGGCG 228 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| | |||||| ||||||||| |||||||| ||||||| || ||||||||| Sbjct 227 GAATATGTCATGTAGCGGTGAAATGCTTAGATATGACATAGAACACCGATAGCGAAGGCA 168 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 || | || || | ||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 167 GCTCACTAGGCCTGGATTGACGCTCAGGGACGAAAGCGTGGGGAGCGAACAGGATTAGAT 108 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAA 342 |||||||||||||||||| ||||| |||||| Sbjct 107 ACCCTGGTAGTCCACGCCGTAAAC--TATCAA 78 >seq3379 Length=347 Score = 262 bits (290), Expect = 1e-67 Identities = 261/336 (78%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 78 TTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTT 137 ||||||||||||||| || | ||| ||| ||||| ||| ||||||| ||| ||||| Sbjct 1 TTACTGGGCGTAAAGGGTCTGTAGGTGGTATAGTAAGTCAGATGTGAAAGCCCAGGGCTC 60 Query 138 AACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCC 197 ||||| |||| |||||||| ||||| |||||||| | ||||| | |||||| | Sbjct 61 AACCTTGGAACTGCATTTGATACTGCTAAACTAGAGTATAGTAGAGGAATGGGGAATTTC 120 Query 198 ACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCT 257 ||||||| |||||||||||||| || | |||||||||||||||||||||| | || Sbjct 121 TGGTGTAGCGGTGAAATGCGTAGAGATCAGAAGGAACACCAATGGCGAAGGCAACATTCT 180 Query 258 GGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 317 || ||| |||||| || | | ||||||||||||||| |||||||||||||||||||||| Sbjct 181 GGACTAATACTGACACTGAGGGACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGG 240 Query 318 TAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG---GATTTACTTCCT-TGGTAAC 373 |||||||||| |||||||| ||||| ||||||| | | || | | || | Sbjct 241 TAGTCCACGCTGTAAACGATGAGTACTAGCTGTTGGGTTCGGTGTAAAGGATCTAGTGGC 300 Query 374 GTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||||||||||| |||| ||||||||||| ||| Sbjct 301 GCAGCTAACGCGTTAAGTACTCCGCCTGGGGACTAC 336 >seq104849 Length=397 Score = 208 bits (230), Expect = 2e-51 Identities = 245/330 (74%), Gaps = 1/330 (0%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 ||||||||| |||||||||||||||||||||||| ||| | | ||||||| |||||| | Sbjct 397 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGAATCA 338 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 |||| ||||| || || |||||| |||| |||| |||||| | |||| ||| Sbjct 337 TTGGGTTTAAAGGGTCCGTAGGCGGGCCATTAAGTCAGGGGTGAAAGTCTGCGGCTCAAC 278 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACG 200 | ||||||| ||| |||| | || |||| || | | |||| | Sbjct 277 CGTAGAATTGCCCTTGATACTGGTGGTCTTGAGTTATGGTGAAGTAACTAGAATATGTAG 218 Query 201 TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGG 260 |||||| ||||||||| ||||||| ||| ||| || |||||||||| || Sbjct 217 TGTAGCGGTGAAATGCATAGATATTACATAGAATACCGATTGCGAAGGCAGGTTACTAAC 158 Query 261 ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 320 ||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 157 ATAT-ACTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAG 99 Query 321 TCCACGCCCTAAACGATATCAACTAGTTGT 350 |||||||| |||||||| ||||| ||| Sbjct 98 TCCACGCCGTAAACGATGGATACTAGCTGT 69 >seq59121 Length=200 Score = 152 bits (168), Expect = 1e-34 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 56 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGA 115 |||| ||||||||| ||||||||||||||||||||||| ||| |||||| | | |||| Sbjct 198 AGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGGTCTTTAAGT 139 Query 116 CAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTG 175 ||| ||||||||| | ||| ||| ||| ||| |||| |||| | || |||| Sbjct 138 CAGAGGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAGATCTTGAGTC 79 Query 176 TGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACA 235 | ||||| |||||||||| |||||| ||||||| ||||||||| ||| ||||| Sbjct 78 CGGAAGAGGTTAGTGGAATTCCCAGTGTAGAGGTGAAATTCGTAGATATTGGGAAGAACA 19 Query 236 CCAATGGCGAAGGCAGC 252 ||| |||||||||| || Sbjct 18 CCAGTGGCGAAGGCGGC 2 >seq7305 Length=327 Score = 152 bits (168), Expect = 1e-34 Identities = 137/172 (80%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| | || || | |||||||||| |||||||||||||||||||||||| |||| | Sbjct 179 TACCTGGAAAAGAAACCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGGGT 120 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | ||||| || || Sbjct 119 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGATTAGTAAGTTAGAGGT 60 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGT 174 |||||||| ||||| |||| |||| ||| ||| ||||| | || |||| Sbjct 59 GAAATCCCAGGGCTCAACCCTGGAACTGCCTTTAATACTGCTAGTCTTGAGT 8 >seq57215 Length=202 Score = 150 bits (166), Expect = 5e-34 Identities = 151/195 (77%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 56 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGA 115 |||| || |||||| ||||||||||||||||||||||| ||| |||||| | || Sbjct 200 AGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCGCGTAGGCGGACTGATCAGT 141 Query 116 CAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTG 175 |||| |||||||||| ||||| |||| |||| ||| |||| |||| | ||||||| Sbjct 140 CAGGGGTGAAATCCCGGGGCTCAACCCCGGAACTGCCTTTGATACTGTCAGTCTAGAGTC 81 Query 176 TGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTG-GAGGAAC 234 | ||||| | ||||| ||| |||||| ||||||| ||||||||| | || |||| Sbjct 80 CGGAAGAGGTGAATGGAACTCCTAGTGTAGAGGTGAAATTCGTAGATATTAGTGAAGAAC 21 Query 235 ACCAATGGCGAAGGC 249 |||| |||||||||| Sbjct 20 ACCAGTGGCGAAGGC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288192375808