Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4131 172 8e-41 seq44288 156 6e-36 seq94566 147 3e-33 seq86798 143 4e-32 seq8808 141 1e-31 seq104604 131 2e-28 seq97179 114 2e-23 seq75365 98.7 1e-18 >seq4131 Length=338 Score = 172 bits (190), Expect = 8e-41 Identities = 187/247 (76%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 327 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAGA 269 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| ||| || ||| ||| || |||||||| Sbjct 268 GCCCTGTGTTTTTGTTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCCACACCAGCTTG- 210 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 ||| | | ||| | ||||||| |||| |||||| | |||||||||| | Sbjct 209 -----CGTAGAA----ACTGGGCCTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGT 159 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||||| | | | |||||| |||||||||||||| ||||||||||||||| Sbjct 158 TCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGTCCACCTGTGTCGGTT 99 Query 242 TACGGTA 248 || |||| Sbjct 98 TAGGGTA 92 >seq44288 Length=222 Score = 156 bits (172), Expect = 6e-36 Identities = 177/233 (76%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 10 CCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTG 69 ||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| | |||||| Sbjct 1 CCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGG-CTTCGCAGAGCCCTGTG 59 Query 70 TTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGT 129 ||||| |||||||||||| ||| || ||| ||| ||| || || || | ||| Sbjct 60 TTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCA-----TCTACTTG-CGT 113 Query 130 TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAAC 189 | || | ||| | |||| ||||||||||| | || |||||||| |||||| | Sbjct 114 AAATAAGG---GTCACGC-TTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCTTCAA 169 Query 190 CACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || ||||| | | | |||||| |||| ||||||||| |||||||||||||||| Sbjct 170 CATAGTTCTCTCAAGCGCCTTGGTATACTCTACCTGTCCACCTGTGTCGGTTT 222 >seq94566 Length=520 Score = 147 bits (162), Expect = 3e-33 Identities = 181/248 (73%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || |||| | || || ||| Sbjct 23 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCTTATACGTCAACTTTC-GTTTTTGCAA 81 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | ||||| ||||| ||| || ||| Sbjct 82 AGCCATGTGTTTTTGATAAACAGTCGCCTGGGCCTATTTACTGCGGCCAACATT-GCT-- 138 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| ||| | ||||||||||||||||| | |||||||||| | Sbjct 139 -------GTT----------GGCGTCTCTTCTCCCGAAGTTACGAGACCATTTTGCCTAG 181 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| |||| ||| | |||||||||||||||| |||| |||||||| ||| Sbjct 182 TTCCTTAGCCATGAATCACTCGAGCACCTTAGTATTCTCTACTTGACTACCTGTGTTGGT 241 Query 241 TTACGGTA 248 || ||||| Sbjct 242 TTGCGGTA 249 >seq86798 Length=704 Score = 143 bits (158), Expect = 4e-32 Identities = 187/253 (74%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || ||||| | |||||| Sbjct 681 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACTTCATCTTACGAT-TTCGCAGA 623 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| || || | ||| ||| | |||| | Sbjct 622 GTGCTGTGTTTTTGATAAACAGTCGCAGCCACCTGATAATTGCAACCCATCTCTGCTCCA 563 Query 122 ----CACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 || ||| ||||| | || ||||| |||||| || ||||||||| | |||||| Sbjct 562 GGAGCAAGTCCCTTCACATAACATGGGCACACCTTCTTCCAAAGTTACGGTGTTATTTTG 503 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| |||| |||| | | | ||||||||||||||||||| ||||| ||| Sbjct 502 CCTAGTTCCTTCACCAGAGTTGTCTCATA-GCCTTAGTATTCTCTACCTACCCACCAGTG 444 Query 236 TCGGTTTACGGTA 248 ||||||||| ||| Sbjct 443 TCGGTTTACAGTA 431 >seq8808 Length=320 Score = 141 bits (156), Expect = 1e-31 Identities = 175/235 (74%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||||||||| || ||||| ||| ||||| | ||||||| | ||| |||||| Sbjct 5 CACCGGGCAGGCGTCAGACCCTATACGTCGTCTTAC-GACTTCGCAGAGCCCTATGTTTT 63 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 |||||||||||||| ||| || | | ||| || | |||| | || | || Sbjct 64 TAGTAAACAGTCGCCACCCCCTGGTTTGTGC--CCCCGACCA-----AGACTTGCGTCCT 116 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 | | | || | ||||||| |||| |||||| | |||||||||| |||||||| Sbjct 117 AATCGG--GC-CTCCTTCTCGCGAACTTACGGAGGTATTTTGCCGAGTTCCTTAAATGTG 173 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| | | | |||||| |||||||||||| | |||||||||| |||||| |||| Sbjct 174 GTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTTGGTTTAGGGTA 228 >seq104604 Length=400 Score = 131 bits (144), Expect = 2e-28 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||||||||||||||| ||||||||||| | |||||| |||| |||| | | | || Sbjct 320 CCTTCTCCCGAAGTTACGGTGCCATTTTGCCTAGTTCCTTCACCAGAGTTGTCTCAAGCG 261 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||||||||||||||||||||||||||||||||| |||| Sbjct 260 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 219 >seq97179 Length=480 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||| ||||||||||||||||||| | |||||||||| |||||| | | ||||| | Sbjct 62 GGCACACCTTCTCCCGAAGTTACGGTGTTATTTTGCCGAGTTCCTTCTCTAGAGTTCTCT 121 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | |||||||| |||||| |||| |||||||||||||||| ||||| Sbjct 122 CAAGCGCCTTAGAATTCTCATCCTGCCCACCTGTGTCGGTTTGCGGTA 169 >seq75365 Length=1304 Score = 98.7 bits (108), Expect = 1e-18 Identities = 158/219 (72%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 32 CCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCC 91 |||||||| || |||| | || || |||| | || |||||||| ||||||||||| || Sbjct 1303 CCGTATACGTCCACTTTC-GTGTTTGCACAGTGCTATGTTTTTAATAAACAGTCGCAGCC 1245 Query 92 CTCTATTCTCTGCGACCACCACCAGCTCAACACG-----TCGTTCACCAGCAGT-GGCAC 145 | ||| | ||| ||| | |||| ||| || |||||| ||| |||| Sbjct 1244 ACCAATTTTTTGCAACCTCTGAG-GCTCCGGACGCGAAGTCCTTCACCCT-AGTAGGCAT 1187 Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||||||||||||| ||||||||||| |||||| ||| |||| | | | | Sbjct 1186 ACCTTCTCCCGAAGTTACGGTATCATTTTGCCGAGTTCCTTCACCTGGGTTCTCTCAAGC 1127 Query 206 GCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGGTTTA 243 |||||| ||||| ||| | |||| |||||| ||||| Sbjct 1126 ACCTTAGGCTTCTC-GCCTCACCCACGTGTGTCCGTTTA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693665734496