Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq94566 129 6e-28 seq104604 86.0 7e-15 seq4131 86.0 7e-15 seq100076 82.4 8e-14 seq44288 82.4 8e-14 seq5660 80.6 3e-13 seq97179 73.4 4e-11 seq75365 73.4 4e-11 >seq94566 Length=520 Score = 129 bits (142), Expect = 6e-28 Identities = 136/175 (78%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| ||||| |||||| || || ||||||||| ||| |||||| ||| || || Sbjct 246 CGCAAACCAACACAGGTAGTCAAGTAGAGAATACTAAGGTGCTCGAGTGATTCATGGCTA 187 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| || | |||||||||||| ||| | | | | ||| ||| | Sbjct 186 AGGAACTAGGCAAAATGGTCTCGTAACTTCGGGA-GAAGAGACGCCA-ACAGCAAT-GTT 130 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| |||||| |||||| |||||||| |||||||||| |||| ||| || Sbjct 129 GGCCGCAGTAAATAGGCCCAGGCGACTGTTTATCAAAAACACATGGCTTTGCAAA 75 >seq104604 Length=400 Score = 86.0 bits (94), Expect = 7e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || ||||||||||||||||| || ||| ||| Sbjct 224 CAAACCGACACAGGTGGTCAGGTAGAGAATACTAAGGCGCTTGAGACAACTCTGGTGAAG 283 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 284 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 318 >seq4131 Length=338 Score = 86.0 bits (94), Expect = 7e-15 Identities = 129/180 (72%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 98 AAACCGACACAGGTGGACAGGTAGAGAATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 157 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA--AGG----GTCCCTACCCAGAAATG 138 |||| |||||| | | | |||| |||| || || ||| || |||| || | || Sbjct 158 AACTCGGCAAAATACCTCCGTAAGTTCGCGAGAAGGAGGCCCAGTTTCTACGCA-AGCTG 216 Query 139 --GGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||| ||| ||| ||| ||| |||||||||||||||||||||||| ||| || Sbjct 217 GTGTGGGGGGCACAGACCAGGGGGTGGCGACTGTTTAACAAAAACACAGGGCTCTGCGAA 276 >seq100076 Length=444 Score = 82.4 bits (90), Expect = 8e-14 Identities = 108/152 (71%), Gaps = 11/152 (7%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| |||| || | ||||| || ||||||| ||| |||| || |||| Sbjct 304 AAACTGACACAGGTAGACGAGGCGAATAGCCTCAGGCGCTCGAGAGAATGGTCGTGAAGG 363 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGG 144 || |||||||| | || | |||| |||| || || | | |||| | ||| Sbjct 364 AATTAGGCAAAATCACTCCGTAAGTTCGCGAGAAGGAGGCCCTTCG-----------GGG 412 Query 145 CGCAGAGAATAGGTCCAGGCAACTGTTTAACA 176 ||||||||| ||| || |||||||||||| || Sbjct 413 CGCAGAGAAAAGGCCCTGGCAACTGTTTATCA 444 >seq44288 Length=222 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 222 AAACCGACACAGGTGGACAGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 163 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG-GTCCCT-----ACCCAGAAATG 138 |||| |||||| || | |||||||||| | || | | |||| || || | Sbjct 162 AACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCTTATTTACGCAAGTAGA 103 Query 139 GGAGGGCG-CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| | || ||| ||| || |||||||| ||||||||||||||| ||| || Sbjct 102 TGAGGGTGGCACAGACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAA 44 >seq5660 Length=335 Score = 80.6 bits (88), Expect = 3e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || || ||| ||| ||| |||||||||| ||| || ||| || || Sbjct 259 CGCAAACCGACACAGGTGGTTGGGATGAGTATTCTAAGGCGCTCGAGAGATTCATGGCTA 318 Query 82 AGGAACTAGGCAAA 95 |||||||||||||| Sbjct 319 AGGAACTAGGCAAA 332 >seq97179 Length=480 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | | || ||| || |||||||||||||| ||| | | Sbjct 166 CGCAAACCGACACAGGTGGGCAGGATGAGAATTCTAAGGCGCTTGAGAGAACTCTAGAGA 107 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC 126 ||||||| |||||| | || | |||||||||||| || | || || Sbjct 106 AGGAACTCGGCAAAATAACACCGTAACTTCGGGAGAAGGTGTGCC 62 >seq75365 Length=1304 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||||||||||||| | | | || | |||||| ||||||| ||| | ||| |||| Sbjct 1090 AAACGGACACACGTGGGTGAGGCGAGAAGCCTAAGGTGCTTGAGAGAACCCAGGTGAAGG 1149 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC 129 |||| |||||| ||| | |||||||||||| || | | ||||| Sbjct 1150 AACTCGGCAAAATGATACCGTAACTTCGGGAGAAGGTATGCCTAC 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530638303808