Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq86798 132 5e-29 seq4131 105 6e-21 seq94566 102 8e-20 seq75365 93.3 4e-17 seq44288 91.5 1e-16 seq8808 87.8 2e-15 seq104604 78.8 9e-13 >seq86798 Length=704 Score = 132 bits (146), Expect = 5e-29 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 21 AGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80 ||||||||||||| ||| | ||| | | || |||| ||||||||||||||| Sbjct 550 AGGGACTTGCTCCTGGAGCAGAGATGGGTTGCAATTATCAGGTGGCTGCGACTGTTTATC 609 Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140 |||||||||||||||||| || || ||| || |||||||||||||||||||||||||| Sbjct 610 AAAAACACAGCACTCTGCGAAATCGTAAGATGAAGTATAGGGTGTGACGCCTGCCCGGTG 669 Query 141 CCGGAAGGTTAATTGA 156 | |||||||||||||| Sbjct 670 CTGGAAGGTTAATTGA 685 >seq4131 Length=338 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 232 ACCAGGGGGTGGCGACTGTTTAACAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 291 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 292 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 327 >seq94566 Length=520 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| |||||||||||| ||||||||| || |||||| |||||||| |||||||| Sbjct 116 AGGCCCAGGCGACTGTTTATCAAAAACACATGGCTTTGCAAAAACGAAAGTTGACGTATA 57 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTG 155 || |||| |||||||||||| |||||||||| || Sbjct 56 AGGCCTGACACCTGCCCGGTGCTGGAAGGTTAAGTG 21 >seq75365 Length=1304 Score = 93.3 bits (102), Expect = 4e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGT 123 ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| Sbjct 1246 GCTGCGACTGTTTATTAAAAACATAGCACTGTGCAAACACGAAAGTGGACGTATACGGT 1304 >seq44288 Length=222 Score = 91.5 bits (100), Expect = 1e-16 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 88 ACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGT 29 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGG 144 ||||||| ||||||||||||||||| || Sbjct 28 ATAGGGTCTGACGCCTGCCCGGTGCTGG 1 >seq8808 Length=320 Score = 87.8 bits (96), Expect = 2e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||| || |||||| || || ||| ||||| Sbjct 88 ACCAGGGGGTGGCGACTGTTTACTAAAAACATAGGGCTCTGCGAAGTCGTAAGACGACGT 29 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCC 142 ||||||| |||||||||||||||||| Sbjct 28 ATAGGGTCTGACGCCTGCCCGGTGCC 3 >seq104604 Length=400 Score = 78.8 bits (86), Expect = 9e-13 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 |||||||||||||||||| || | | ||||| |||||||||||||||||||||||||| Sbjct 340 GGACTTGCTCCGTAAGCTGTTGACAGCCGAAGTGACCAGGCCGCTGCGACTGTTTATTAA 399 Query 83 A 83 | Sbjct 400 A 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476295826912